General information for g2194.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-N-acetylhexosamine pyrophosphorylase.
Parent gene
- The parent gene g2194 is located on chr_3: 15895155..15896421 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2194 | g2194.t3 | TSS | g2194.t3 | 15893992 | 15893992 |
| chr_3 | g2194 | g2194.t3 | isoform | g2194.t3 | 15894331 | 15895148 |
| chr_3 | g2194 | g2194.t3 | exon | g2194.t3.exon1 | 15894331 | 15894610 |
| chr_3 | g2194 | g2194.t3 | cds | g2194.t3.CDS1 | 15894331 | 15894610 |
| chr_3 | g2194 | g2194.t3 | exon | g2194.t3.exon2 | 15894676 | 15895069 |
| chr_3 | g2194 | g2194.t3 | cds | g2194.t3.CDS2 | 15894676 | 15895069 |
| chr_3 | g2194 | g2194.t3 | exon | g2194.t3.exon3 | 15895137 | 15895148 |
| chr_3 | g2194 | g2194.t3 | cds | g2194.t3.CDS3 | 15895137 | 15895146 |
| chr_3 | g2194 | g2194.t3 | TTS | g2194.t3 | NA | NA |
Sequences
>g2194.t3 Gene=g2194 Length=686
ATGATAAATTTTGAAAATTTAAAAGAAAAATTAGCGCGATATGGACAAGAGCATTTGCTT
AATTTTTGGGATCAGTTGAATGATGAAGAGCGCAAGCAACTTGTGCAAGACATTCAAGAA
CTTGATCTTGAAGAAATTCAGTCTTTCTTTAAGCGTGCAACTGCATCGCTTGAGGAGAGT
TCTGCAAAGTTAGATGATCGAATGGAGGCCATTCCTGAATCAACTTTTATGTCAATAACT
CGAACTGACAGTGAGAAATTGAAAGTCTATGAACAAGAAGGTCTTATGCAAATCGCAAAC
AATCGAGTTGGTGTGCTGCTAATGGCTGGAGGACAAGGGACACGATTAGGCTCAACAAAT
CCAAAAGGAATGTATGATATTAAATTGCCATCACGTAAATCATTATTTAGAGTGCAAGGT
GAAAGAATAAGGAAGTTGCAAGAGCTTGCAAAAAAATTGACAGGCAAAGAAGGAAACATC
GTTTGGTATATAATGACTAGTGAACATACCATGGTGCCAACTCGAAAGTATTTTAAGGAA
AATAATTATTTTGGACTTCGGGAAGAAAATATCTTGATGTTTGAACAGGGCAGTTTACCT
TGCTTCGATTTTGACGGAAAGATATTGTTAGACGAAAAACACCGTATTTCAAAGGCACCA
GATGGCAATGGTAAGTGGTATTTACA
>g2194.t3 Gene=g2194 Length=228
MINFENLKEKLARYGQEHLLNFWDQLNDEERKQLVQDIQELDLEEIQSFFKRATASLEES
SAKLDDRMEAIPESTFMSITRTDSEKLKVYEQEGLMQIANNRVGVLLMAGGQGTRLGSTN
PKGMYDIKLPSRKSLFRVQGERIRKLQELAKKLTGKEGNIVWYIMTSEHTMVPTRKYFKE
NNYFGLREENILMFEQGSLPCFDFDGKILLDEKHRISKAPDGNGKWYL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2194.t3 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 1 | 228 | 0 |
| 2 | g2194.t3 | PANTHER | PTHR11952 | UDP- GLUCOSE PYROPHOSPHORYLASE | 3 | 227 | 0 |
| 3 | g2194.t3 | PANTHER | PTHR11952:SF4 | UDP-N-ACETYLHEXOSAMINE PYROPHOSPHORYLASE | 3 | 227 | 0 |
| 1 | g2194.t3 | Pfam | PF01704 | UTP–glucose-1-phosphate uridylyltransferase | 47 | 227 | 0 |
| 4 | g2194.t3 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 4 | 227 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0070569 | uridylyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
