General information for g2200.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative polypeptide N-acetylgalactosaminyltransferase 9.
Parent gene
- The parent gene g2200 is located on chr_3: 15942741..15947160 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2200 | g2200.t1 | TSS | g2200.t1 | 15942714 | 15942714 |
| chr_3 | g2200 | g2200.t1 | isoform | g2200.t1 | 15942741 | 15947160 |
| chr_3 | g2200 | g2200.t1 | exon | g2200.t1.exon1 | 15942741 | 15944119 |
| chr_3 | g2200 | g2200.t1 | cds | g2200.t1.CDS1 | 15942741 | 15944119 |
| chr_3 | g2200 | g2200.t1 | exon | g2200.t1.exon2 | 15944175 | 15944256 |
| chr_3 | g2200 | g2200.t1 | cds | g2200.t1.CDS2 | 15944175 | 15944256 |
| chr_3 | g2200 | g2200.t1 | exon | g2200.t1.exon3 | 15944313 | 15944742 |
| chr_3 | g2200 | g2200.t1 | cds | g2200.t1.CDS3 | 15944313 | 15944742 |
| chr_3 | g2200 | g2200.t1 | exon | g2200.t1.exon4 | 15944816 | 15944931 |
| chr_3 | g2200 | g2200.t1 | cds | g2200.t1.CDS4 | 15944816 | 15944931 |
| chr_3 | g2200 | g2200.t1 | exon | g2200.t1.exon5 | 15945010 | 15945058 |
| chr_3 | g2200 | g2200.t1 | cds | g2200.t1.CDS5 | 15945010 | 15945058 |
| chr_3 | g2200 | g2200.t1 | exon | g2200.t1.exon6 | 15945380 | 15945808 |
| chr_3 | g2200 | g2200.t1 | cds | g2200.t1.CDS6 | 15945380 | 15945808 |
| chr_3 | g2200 | g2200.t1 | exon | g2200.t1.exon7 | 15945878 | 15946338 |
| chr_3 | g2200 | g2200.t1 | cds | g2200.t1.CDS7 | 15945878 | 15946338 |
| chr_3 | g2200 | g2200.t1 | exon | g2200.t1.exon8 | 15946399 | 15946553 |
| chr_3 | g2200 | g2200.t1 | cds | g2200.t1.CDS8 | 15946399 | 15946553 |
| chr_3 | g2200 | g2200.t1 | exon | g2200.t1.exon9 | 15946620 | 15947160 |
| chr_3 | g2200 | g2200.t1 | cds | g2200.t1.CDS9 | 15946620 | 15947160 |
| chr_3 | g2200 | g2200.t1 | TTS | g2200.t1 | NA | NA |
Sequences
>g2200.t1 Gene=g2200 Length=3642
ATGTTCGAATATCAACGTTATCGAAATCATCACCGTCGACAAATCAAAACAATATTGAAA
ATCATTATTTTTATCACGCTTTTATGGTGGCTTTTTATTTTTGGATTTAGGCAAAATGAA
AACGATATTGATAATGGCATCGTGGAACAATTAGATAGAAATCAAATTGAAAAGTCAAAT
CTGTACGCTGAAAATGAGGATCAAGATAAAGAAGCACTTGAATTAGAAAAAAATCAAGAT
GAAATTATGAAAGAGTTTCTACACAGACAAAAAGAAAATATGAAATTCGAAGAAGAAAAA
ATAAAAAAAGAAATTTCATTTGGTTCCATTAAATCAGCATTAAATAATATGGATCTTTTC
TCATTAAATGATTTATTAGGAGATTATGCTAAAGAAATAAGGAAAGAAGATTTTAAAGAA
ATTTTTGGTGATTTGAGTAATATAAATGTTTTCGATGTTGTTGGGAAAGCTAACAATTTC
ATAGATAATGCTAAAGAAAAAATTGAAAATGAATCCGAAAAACCAAAAGAAAAGGAAAAA
GCGATTGCTATAAAAATTCCACAGAATGAAATCATTATTCATAAGAAAGAAGAAACGACG
ATAAAAGATGAAGAACAAAATCTAGAAGATTCAAGACCAGATGAAATTGTTGATGAGGAA
AAAGAACCTTTTGGTCATTATGGAAAAGCTGTTACACTTCCATCAGATATTCCCGAAAAC
ATTAAGAAATTAGTTGAAGAAGGATGGAAAAATCATGAATTTAATGAATATGTTTCAAAT
TTAATTCCAATTAATCGAACTTTGCGTGATTTTCGTTCTGATTATTGTCGTGATATGCAG
AATGTTTATTCAAAAAATGTACCAAAAGTTTCGATTGTGATGGTCTTTCATAATGAAGCA
TGGAGCACTTTAATGCGTTCAATTCAGTCAATTCTCAATAGAACACCAGAAGAAGTGATT
CATGAGATAATTTTAGTTGATGATTGTTCAACTATGGAGCATTTGAAAGTGCAATTAGAT
GAATTTGTAAAAACTAACATCAAAATACGTTTGATTCGTCTTCCCGAGAGAAAAGGATTG
ATTTATGCACGCAATATTGGAGCTTCAGAAGCAAAAAGTGAAATTTTAGTTTTTCTTGAT
TCTCACATTGAATGCACAAAAGGATGGATTGAACCATTAATTGATAGAGTGATATTAAAC
GCAACAACGATTGCTGTTCCGGTTATTGAAATAATTAATGATCAAACATTCGCTTTAGAA
CCAAAAGATCATCCAACCTATGTGACTTTAGGTGGATTCAGTTGGAATCTTCAATTTCGA
TGGTTTCATAAGCAAACTTCTGAACTGAAAGAACCACAAGCACCTATCAAATCACCAACC
ATGGCTGGTGGACTTTTTGCAATTGCTTCAAAATTTTTCAAGCATCTTGGAATGTATGAT
CCAGATTTGGATCTTTGGGGAGGTGAAAATCTTGAGTTAAGTTTCAAAGCATGGATGTGT
GGTGGATCTATTGAAATTATACCGTGTTCTCATGTTGGTCACGTTTTTAGAAAAAAGTCA
CCGTATGTATGGCGAACGGGTGTCGATGTTTTGAGAAAAAATTCATTGCGTGTTGCAAAA
GTTTGGATGGACGATTATGCCGTGTTTTATAACTATGCAACAGGCTTTGAAAAAACAGAT
TATGGCAATATAAGTGCGCGTGTAAAACTTCGTCAAGATTTACAATGTAAAAGTTTTCGA
TGGTACTTAAAGAATGTTTATCCTGAGAAAAAAGTTCCATCAGAAGGTATTGCTTATGGG
CAAATTCAAAATCTTGGATATGGTGCTAAAATGTGTTTAGATGGAAAAGCAGCAAAAGAT
TCTCCATCACTTACTGTTAAGTATTGTCACGGACTTGGCGGAAACCAATTTTGGCAGTAT
GATGGTGAAATTGCAAGAGATAATTATTGTGTGACATATGATGCTCATAATTTAATGACA
CAACATTGTAAACGAAGCAGTAAACAGCTCTTCACATATGATCCTGATGAGAAGCAAATT
TATATTCATCATAGCGAAACAGTAGAAATAGATTCAGAAGAGAGAAAATTAAATGAAAAA
TTTAAAGCTAGCTTTATTGTGAATTTAGTAAAACCACCTTTAAATGTTTTTGGAAATAAT
GTAGTTGTTGGGGAATTAGGTGAACCAGTCCATTTACCAAGCAATTTATCAGATGAAATC
AAAAAATTAATTGATGATGGATGGAAAAAGCATGAATTTAATCAATATATTTCAGATTTG
ATTTCAGTAAAAAGAACTTTAAATGATTTTAGAATTGATGAATGTAAAAATCTTATTTAT
CTAAAAGAACTTCCACAAACATCAGTCATCATTACATTTTACAATGAAGCATGGTCAACG
CTTTTAAGGACTGTTCATTCAGTGCTAGATAGAGGTGGAGATCATGTGTTAGAAGTGATT
TTGGTCGATGACTTTTCTGACATGGTTCATTTAAAAGACCCACTTGACAGTTATTTCAAA
AATTTCCATAAAGTCAAAATTATTAGAATGTCATTTCGTGTTGGCCTTATTAAATCAAGA
ATTAATGGATTTTTAGAATCTAAAGGTGAAATTGTTACATTTCTTGATTCTCATTGTGAA
TGTGCTGATGGATGGCTTGAACCATTACTTGCAAAAGTTGCTGAAGATAATCAAATTGTG
GTAGTTCCTGTTATAGACACAATTGATGTAAATACATTCGAATATCAATGGATAAAAAGT
ATAAATTCAATTCCAATTGGTGGTTTTGACTGGACATTAAATTTTAAATGGGCTTTGAAT
TTTGTTGAAAATCAAATACCAACATTGCCAATTCGAACACCAGTAATGTCTGGTGGATTG
TTTGCAATCAATAGACATTTTTTCATAAGATTAGGATTATATGATCCAGAACTGGATATA
TGGGGTGGTGAAAATCTCGAATTAAGTTTTAAAACCTGGATGTGTGGTGGTACTTTAGAA
ATTATTCCTTGTTCCCATGTGGGACACGTTTTTCGTTCAAAATCTCCTTATAACAAAGAC
ATTGCGGGAAGAAATGCAATGAAGAGAAATTTAATTCGAGTAGCTCAAGTGTGGATGGAT
GACTATGCAAAATTCTTTCTCATGAGGATACATGCACGTGAGAATGATTATACTGATGTT
TCGATGAGATTGTTTAAGAAGGAAGAATGCAAGAGCTTCAAATGGTACCTTCAGAATATT
TATCCATCACAATTTGATGTAGCTGAAGCTATAGCACAAGGAAAAATGAGAAATTCTAAA
TTTAATGCAATCTGTCTTGAGATGAATGCACAGAGTTATAAATTAGAAAAATGTCGTGAC
AGAAGAGAACAATTTATTGTGTTGACTGATAAAAATGAGCTAAGACGAGACGATTATTGT
TTATCACTTCACAAAAATGGACAAATTAAGCTCGATTATTGTTTTGGGCTTGAGTCAGAG
CATGTTTGGCAGTATGATAAAAACTCACATTTTTTAAAGCACACTCTAGTCCAAAATTGT
CTCTCGATTGACATTGAAAGTAATAGTTTAATAATGGAAAATTGTAGCGATTCTATTGTA
CAACAGTGGACCTTCGATTTTATTAAAAATTTTCATTACTAA
>g2200.t1 Gene=g2200 Length=1213
MFEYQRYRNHHRRQIKTILKIIIFITLLWWLFIFGFRQNENDIDNGIVEQLDRNQIEKSN
LYAENEDQDKEALELEKNQDEIMKEFLHRQKENMKFEEEKIKKEISFGSIKSALNNMDLF
SLNDLLGDYAKEIRKEDFKEIFGDLSNINVFDVVGKANNFIDNAKEKIENESEKPKEKEK
AIAIKIPQNEIIIHKKEETTIKDEEQNLEDSRPDEIVDEEKEPFGHYGKAVTLPSDIPEN
IKKLVEEGWKNHEFNEYVSNLIPINRTLRDFRSDYCRDMQNVYSKNVPKVSIVMVFHNEA
WSTLMRSIQSILNRTPEEVIHEIILVDDCSTMEHLKVQLDEFVKTNIKIRLIRLPERKGL
IYARNIGASEAKSEILVFLDSHIECTKGWIEPLIDRVILNATTIAVPVIEIINDQTFALE
PKDHPTYVTLGGFSWNLQFRWFHKQTSELKEPQAPIKSPTMAGGLFAIASKFFKHLGMYD
PDLDLWGGENLELSFKAWMCGGSIEIIPCSHVGHVFRKKSPYVWRTGVDVLRKNSLRVAK
VWMDDYAVFYNYATGFEKTDYGNISARVKLRQDLQCKSFRWYLKNVYPEKKVPSEGIAYG
QIQNLGYGAKMCLDGKAAKDSPSLTVKYCHGLGGNQFWQYDGEIARDNYCVTYDAHNLMT
QHCKRSSKQLFTYDPDEKQIYIHHSETVEIDSEERKLNEKFKASFIVNLVKPPLNVFGNN
VVVGELGEPVHLPSNLSDEIKKLIDDGWKKHEFNQYISDLISVKRTLNDFRIDECKNLIY
LKELPQTSVIITFYNEAWSTLLRTVHSVLDRGGDHVLEVILVDDFSDMVHLKDPLDSYFK
NFHKVKIIRMSFRVGLIKSRINGFLESKGEIVTFLDSHCECADGWLEPLLAKVAEDNQIV
VVPVIDTIDVNTFEYQWIKSINSIPIGGFDWTLNFKWALNFVENQIPTLPIRTPVMSGGL
FAINRHFFIRLGLYDPELDIWGGENLELSFKTWMCGGTLEIIPCSHVGHVFRSKSPYNKD
IAGRNAMKRNLIRVAQVWMDDYAKFFLMRIHARENDYTDVSMRLFKKEECKSFKWYLQNI
YPSQFDVAEAIAQGKMRNSKFNAICLEMNAQSYKLEKCRDRREQFIVLTDKNELRRDDYC
LSLHKNGQIKLDYCFGLESEHVWQYDKNSHFLKHTLVQNCLSIDIESNSLIMENCSDSIV
QQWTFDFIKNFHY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 23 | g2200.t1 | CDD | cd02510 | pp-GalNAc-T | 291 | 587 | 2.72452E-144 |
| 21 | g2200.t1 | CDD | cd00161 | RICIN | 600 | 676 | 1.12443E-7 |
| 22 | g2200.t1 | CDD | cd02510 | pp-GalNAc-T | 788 | 1081 | 6.53565E-138 |
| 20 | g2200.t1 | CDD | cd00161 | RICIN | 1094 | 1205 | 9.39828E-6 |
| 16 | g2200.t1 | Coils | Coil | Coil | 58 | 85 | - |
| 15 | g2200.t1 | Coils | Coil | Coil | 154 | 174 | - |
| 13 | g2200.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 205 | 594 | 2.7E-151 |
| 12 | g2200.t1 | Gene3D | G3DSA:2.80.10.50 | - | 595 | 703 | 3.5E-16 |
| 14 | g2200.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 713 | 1089 | 1.7E-143 |
| 11 | g2200.t1 | Gene3D | G3DSA:2.80.10.50 | - | 1090 | 1210 | 3.9E-16 |
| 5 | g2200.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 79 | 683 | 0.0 |
| 6 | g2200.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 733 | 1207 | 0.0 |
| 4 | g2200.t1 | Pfam | PF00535 | Glycosyl transferase family 2 | 291 | 471 | 1.5E-28 |
| 2 | g2200.t1 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 599 | 687 | 5.0E-11 |
| 3 | g2200.t1 | Pfam | PF00535 | Glycosyl transferase family 2 | 788 | 970 | 7.2E-33 |
| 1 | g2200.t1 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 1093 | 1203 | 5.8E-12 |
| 17 | g2200.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 17 | - |
| 19 | g2200.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 18 | 36 | - |
| 18 | g2200.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 37 | 1213 | - |
| 28 | g2200.t1 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 598 | 663 | 10.545 |
| 27 | g2200.t1 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 1092 | 1206 | 15.441 |
| 26 | g2200.t1 | SMART | SM00458 | ricin_3 | 599 | 704 | 0.0079 |
| 25 | g2200.t1 | SMART | SM00458 | ricin_3 | 1093 | 1206 | 1.6E-4 |
| 10 | g2200.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 265 | 589 | 8.06E-57 |
| 7 | g2200.t1 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 593 | 686 | 6.27E-15 |
| 9 | g2200.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 765 | 1082 | 1.41E-52 |
| 8 | g2200.t1 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 1091 | 1206 | 1.87E-17 |
| 24 | g2200.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 17 | 36 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed