General information for g2201.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative polypeptide N-acetylgalactosaminyltransferase 9.
Parent gene
- The parent gene g2201 is located on chr_3: 15949432..15950456 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2201 | g2201.t1 | TSS | g2201.t1 | 15947314 | 15947314 |
| chr_3 | g2201 | g2201.t1 | isoform | g2201.t1 | 15947380 | 15950456 |
| chr_3 | g2201 | g2201.t1 | exon | g2201.t1.exon1 | 15947380 | 15948113 |
| chr_3 | g2201 | g2201.t1 | cds | g2201.t1.CDS1 | 15947380 | 15948113 |
| chr_3 | g2201 | g2201.t1 | exon | g2201.t1.exon2 | 15948178 | 15948233 |
| chr_3 | g2201 | g2201.t1 | cds | g2201.t1.CDS2 | 15948178 | 15948233 |
| chr_3 | g2201 | g2201.t1 | exon | g2201.t1.exon3 | 15948293 | 15948606 |
| chr_3 | g2201 | g2201.t1 | cds | g2201.t1.CDS3 | 15948293 | 15948606 |
| chr_3 | g2201 | g2201.t1 | exon | g2201.t1.exon4 | 15949432 | 15949509 |
| chr_3 | g2201 | g2201.t1 | cds | g2201.t1.CDS4 | 15949432 | 15949509 |
| chr_3 | g2201 | g2201.t1 | exon | g2201.t1.exon5 | 15949569 | 15949644 |
| chr_3 | g2201 | g2201.t1 | cds | g2201.t1.CDS5 | 15949569 | 15949644 |
| chr_3 | g2201 | g2201.t1 | exon | g2201.t1.exon6 | 15949705 | 15950456 |
| chr_3 | g2201 | g2201.t1 | cds | g2201.t1.CDS6 | 15949705 | 15950456 |
| chr_3 | g2201 | g2201.t1 | TTS | g2201.t1 | 15950464 | 15950464 |
Sequences
>g2201.t1 Gene=g2201 Length=2010
ATGTATACGTCAAAATTTAGACTTTGTAGAATTTTATTTACTGCTGGCTTCATATGGCTT
ATGACTGTTTTAACTTTATTTCACTATTGGGAATTGATTATGGAACATCAAATAAAGTTA
ACAAAATTTTCAAAAAATCCTACTGATGATAATTTAGTGTCTCAAGATTTTCATACAGAA
AAGTTAATTCAAACAACCGCGAGCAATAAAGAAGCAGAGAAAATAAGCACGAGAGAGGCA
ACAACGTGGAAAAAATTTACAATAATGACAGATAAACGAACACGAAGACCTCACAAGAGT
AGAAAAACCACAACAGAATCTACCACGACCACTACAACAACCACATCATCCTCCACATCT
ACAACTTTATCAACTACACAAGCAACAACACGAAAAAAGAGAGCATATGAGAGAGTTATC
ACACCTGTTCCTGATGCAATCTACACTCTCCTAAATTTGCCTAAAAATGTTGGCGAAGGT
GGTGCTATCGTTCGAATTCAAGATCCACCACCTGAAATTAAGCAGAAAATTGATGCCGGC
TGGTCGAGACATGAATTTAATGAATTTCTTTCTGATTTAATCTCAGTTAATCGCTCAGTT
CCAGACCCAAGAAGTGAATACTGTAAACAAAAAGGATTATATCTTGAAAATCTGCCAATG
ACGTCAGTTATCATTATTTTTCACAATGAAGCATGGTCGACATTACTAAGGACAGTACAT
TCTGTTCTCAATAGATCTCCACCACATTTAATTAAGGAAATTATTTTAGTTGATGATTAT
TCAAATATGTTACATTTAAAAGAAGCTCTCGAAGATTACATGTCAGATTTTTCTAAAGTA
AAAATTGTTCGAATGCCAAAACGTGTAGGATTAATAAAGGCGAGGATTGCTGGAACTGAA
GCAGCAACAGCAGAAACTCTGACATTTTTAGATTCTCATGTTGAATGTGCAGAAGGTTGG
CTTGAACCACTTTTAGATAGAATAGCAAGAAATAAAACCAAAGTTGTTTGCCCTGTGATT
GATGTCATTGATGATGATTCATTAGCATTCAGTTATCAAGATGCAAGTGGATTGCAAGTT
GGCGGTTTTGATTGGGAAATGACTTTTGATTGGCATATGGTATCAGAAAGAGAAAGAAAA
CGTAAGCAAAATCCATGGGAACCAACTTTTTCACCAACTATGGCTGGTGGTTTATTTTCA
ATTGACAAAGAATTCTTCATAAAATTGGGACTTTATGATGATGGTTTTGATATTTGGGGT
GGTGAAAATCTCGAATTAAGTTTTAAAACTTGGATGTGCGGCGGAACTTTGGAAATAATT
CCATGCTCTCACGTTGGACACATCTTTAGAAAAAAATCTCCATATAAATGGCGACCAGGA
GTTGATGTGCTAAAAATAAATACAATAAGACTTGTTGAAGTGTGGCTTGATGATTATGCT
AAATTCTATTATGTTAGAAGAGGCGCAGACAAAGGAAATTTTGGTGATATTTCATCAAGA
GTGGAATTAAGGAAAAATTTAAATTGCAAAAGTTTTAAATGGTACTTGGAAAATGTCTAT
CCAGAACAGATTGTGCCAGATAATCTTGGTGAAGGTTATATTAAAAATATTGGACTTGAT
AATTCACCATGCCTTGATGCTCCAATAATAGACAGTCAAATGAAAACTCAAGTGGCATTT
TATGGATGTCATAATATGGGTGGAAATCAATTTTTTGAATTTTCTCGTGATCATGAAATC
AAAAGAAAAGAGCGATGTTTAGATTATTCAAAAGATACAAATGAATTAGCATTTGTGCCG
TGTCACAAAAGCAAAGGCAATCAATACTGGTCTTATATCATAGACACAAAACAATTTTAT
CATAAGCAGTCCAACAGATGTCTTTCATTAGAGCGACAAAGTTATACATATTTGCCATCA
ATGGTGCATTGTGATGAAAAGAGTAAAAATCAACAATGGGAATTTCAATATGTTTATCCA
GAAAAATTTAATAAAAAAACCACAAATTGA
>g2201.t1 Gene=g2201 Length=669
MYTSKFRLCRILFTAGFIWLMTVLTLFHYWELIMEHQIKLTKFSKNPTDDNLVSQDFHTE
KLIQTTASNKEAEKISTREATTWKKFTIMTDKRTRRPHKSRKTTTESTTTTTTTTSSSTS
TTLSTTQATTRKKRAYERVITPVPDAIYTLLNLPKNVGEGGAIVRIQDPPPEIKQKIDAG
WSRHEFNEFLSDLISVNRSVPDPRSEYCKQKGLYLENLPMTSVIIIFHNEAWSTLLRTVH
SVLNRSPPHLIKEIILVDDYSNMLHLKEALEDYMSDFSKVKIVRMPKRVGLIKARIAGTE
AATAETLTFLDSHVECAEGWLEPLLDRIARNKTKVVCPVIDVIDDDSLAFSYQDASGLQV
GGFDWEMTFDWHMVSERERKRKQNPWEPTFSPTMAGGLFSIDKEFFIKLGLYDDGFDIWG
GENLELSFKTWMCGGTLEIIPCSHVGHIFRKKSPYKWRPGVDVLKINTIRLVEVWLDDYA
KFYYVRRGADKGNFGDISSRVELRKNLNCKSFKWYLENVYPEQIVPDNLGEGYIKNIGLD
NSPCLDAPIIDSQMKTQVAFYGCHNMGGNQFFEFSRDHEIKRKERCLDYSKDTNELAFVP
CHKSKGNQYWSYIIDTKQFYHKQSNRCLSLERQSYTYLPSMVHCDEKSKNQQWEFQYVYP
EKFNKKTTN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g2201.t1 | CDD | cd02510 | pp-GalNAc-T | 222 | 520 | 2.66328E-172 |
| 12 | g2201.t1 | CDD | cd00161 | RICIN | 532 | 655 | 1.38221E-20 |
| 8 | g2201.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 148 | 526 | 3.8E-162 |
| 7 | g2201.t1 | Gene3D | G3DSA:2.80.10.50 | - | 528 | 662 | 4.3E-33 |
| 17 | g2201.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 130 | - |
| 16 | g2201.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 130 | - |
| 3 | g2201.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 6 | 657 | 1.5E-206 |
| 4 | g2201.t1 | PANTHER | PTHR11675:SF112 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 9-RELATED | 6 | 657 | 1.5E-206 |
| 2 | g2201.t1 | Pfam | PF00535 | Glycosyl transferase family 2 | 222 | 405 | 1.6E-36 |
| 1 | g2201.t1 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 532 | 653 | 6.9E-24 |
| 9 | g2201.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 11 | g2201.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 30 | - |
| 10 | g2201.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 31 | 669 | - |
| 18 | g2201.t1 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 530 | 656 | 21.459 |
| 15 | g2201.t1 | SMART | SM00458 | ricin_3 | 531 | 656 | 2.4E-23 |
| 6 | g2201.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 197 | 522 | 5.16E-57 |
| 5 | g2201.t1 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 526 | 656 | 6.19E-30 |
| 14 | g2201.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 34 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K00710 (polypeptide N-acetylgalactosaminyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed