General information for g2201.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative polypeptide N-acetylgalactosaminyltransferase 9.
Parent gene
- The parent gene g2201 is located on chr_3: 15949432..15950456 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2201 | g2201.t3 | TSS | g2201.t3 | 15947314 | 15947314 |
| chr_3 | g2201 | g2201.t3 | isoform | g2201.t3 | 15947380 | 15950456 |
| chr_3 | g2201 | g2201.t3 | exon | g2201.t3.exon1 | 15947380 | 15948113 |
| chr_3 | g2201 | g2201.t3 | exon | g2201.t3.exon2 | 15948178 | 15948231 |
| chr_3 | g2201 | g2201.t3 | exon | g2201.t3.exon3 | 15948293 | 15948606 |
| chr_3 | g2201 | g2201.t3 | cds | g2201.t3.CDS1 | 15948355 | 15948606 |
| chr_3 | g2201 | g2201.t3 | exon | g2201.t3.exon4 | 15949432 | 15949509 |
| chr_3 | g2201 | g2201.t3 | cds | g2201.t3.CDS2 | 15949432 | 15949509 |
| chr_3 | g2201 | g2201.t3 | exon | g2201.t3.exon5 | 15949569 | 15949644 |
| chr_3 | g2201 | g2201.t3 | cds | g2201.t3.CDS3 | 15949569 | 15949644 |
| chr_3 | g2201 | g2201.t3 | exon | g2201.t3.exon6 | 15949705 | 15950456 |
| chr_3 | g2201 | g2201.t3 | cds | g2201.t3.CDS4 | 15949705 | 15950456 |
| chr_3 | g2201 | g2201.t3 | TTS | g2201.t3 | 15950464 | 15950464 |
Sequences
>g2201.t3 Gene=g2201 Length=2008
ATGTATACGTCAAAATTTAGACTTTGTAGAATTTTATTTACTGCTGGCTTCATATGGCTT
ATGACTGTTTTAACTTTATTTCACTATTGGGAATTGATTATGGAACATCAAATAAAGTTA
ACAAAATTTTCAAAAAATCCTACTGATGATAATTTAGTGTCTCAAGATTTTCATACAGAA
AAGTTAATTCAAACAACCGCGAGCAATAAAGAAGCAGAGAAAATAAGCACGAGAGAGGCA
ACAACGTGGAAAAAATTTACAATAATGACAGATAAACGAACACGAAGACCTCACAAGAGT
AGAAAAACCACAACAGAATCTACCACGACCACTACAACAACCACATCATCCTCCACATCT
ACAACTTTATCAACTACACAAGCAACAACACGAAAAAAGAGAGCATATGAGAGAGTTATC
ACACCTGTTCCTGATGCAATCTACACTCTCCTAAATTTGCCTAAAAATGTTGGCGAAGGT
GGTGCTATCGTTCGAATTCAAGATCCACCACCTGAAATTAAGCAGAAAATTGATGCCGGC
TGGTCGAGACATGAATTTAATGAATTTCTTTCTGATTTAATCTCAGTTAATCGCTCAGTT
CCAGACCCAAGAAGTGAATACTGTAAACAAAAAGGATTATATCTTGAAAATCTGCCAATG
ACGTCAGTTATCATTATTTTTCACAATGAAGCATGGTCGACATTACTAAGGACAGTACAT
TCTGTTCTCAATAGATCTCCACCACATTTAATTAAGGAAATTATTTTAGTTGATGATTAT
TCAAATATTACATTTAAAAGAAGCTCTCGAAGATTACATGTCAGATTTTTCTAAAGTAAA
AATTGTTCGAATGCCAAAACGTGTAGGATTAATAAAGGCGAGGATTGCTGGAACTGAAGC
AGCAACAGCAGAAACTCTGACATTTTTAGATTCTCATGTTGAATGTGCAGAAGGTTGGCT
TGAACCACTTTTAGATAGAATAGCAAGAAATAAAACCAAAGTTGTTTGCCCTGTGATTGA
TGTCATTGATGATGATTCATTAGCATTCAGTTATCAAGATGCAAGTGGATTGCAAGTTGG
CGGTTTTGATTGGGAAATGACTTTTGATTGGCATATGGTATCAGAAAGAGAAAGAAAACG
TAAGCAAAATCCATGGGAACCAACTTTTTCACCAACTATGGCTGGTGGTTTATTTTCAAT
TGACAAAGAATTCTTCATAAAATTGGGACTTTATGATGATGGTTTTGATATTTGGGGTGG
TGAAAATCTCGAATTAAGTTTTAAAACTTGGATGTGCGGCGGAACTTTGGAAATAATTCC
ATGCTCTCACGTTGGACACATCTTTAGAAAAAAATCTCCATATAAATGGCGACCAGGAGT
TGATGTGCTAAAAATAAATACAATAAGACTTGTTGAAGTGTGGCTTGATGATTATGCTAA
ATTCTATTATGTTAGAAGAGGCGCAGACAAAGGAAATTTTGGTGATATTTCATCAAGAGT
GGAATTAAGGAAAAATTTAAATTGCAAAAGTTTTAAATGGTACTTGGAAAATGTCTATCC
AGAACAGATTGTGCCAGATAATCTTGGTGAAGGTTATATTAAAAATATTGGACTTGATAA
TTCACCATGCCTTGATGCTCCAATAATAGACAGTCAAATGAAAACTCAAGTGGCATTTTA
TGGATGTCATAATATGGGTGGAAATCAATTTTTTGAATTTTCTCGTGATCATGAAATCAA
AAGAAAAGAGCGATGTTTAGATTATTCAAAAGATACAAATGAATTAGCATTTGTGCCGTG
TCACAAAAGCAAAGGCAATCAATACTGGTCTTATATCATAGACACAAAACAATTTTATCA
TAAGCAGTCCAACAGATGTCTTTCATTAGAGCGACAAAGTTATACATATTTGCCATCAAT
GGTGCATTGTGATGAAAAGAGTAAAAATCAACAATGGGAATTTCAATATGTTTATCCAGA
AAAATTTAATAAAAAAACCACAAATTGA
>g2201.t3 Gene=g2201 Length=385
MPKRVGLIKARIAGTEAATAETLTFLDSHVECAEGWLEPLLDRIARNKTKVVCPVIDVID
DDSLAFSYQDASGLQVGGFDWEMTFDWHMVSERERKRKQNPWEPTFSPTMAGGLFSIDKE
FFIKLGLYDDGFDIWGGENLELSFKTWMCGGTLEIIPCSHVGHIFRKKSPYKWRPGVDVL
KINTIRLVEVWLDDYAKFYYVRRGADKGNFGDISSRVELRKNLNCKSFKWYLENVYPEQI
VPDNLGEGYIKNIGLDNSPCLDAPIIDSQMKTQVAFYGCHNMGGNQFFEFSRDHEIKRKE
RCLDYSKDTNELAFVPCHKSKGNQYWSYIIDTKQFYHKQSNRCLSLERQSYTYLPSMVHC
DEKSKNQQWEFQYVYPEKFNKKTTN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g2201.t3 | CDD | cd00161 | RICIN | 248 | 371 | 0.000 |
| 9 | g2201.t3 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 1 | 243 | 0.000 |
| 8 | g2201.t3 | Gene3D | G3DSA:2.80.10.50 | - | 244 | 378 | 0.000 |
| 3 | g2201.t3 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 2 | 373 | 0.000 |
| 4 | g2201.t3 | PANTHER | PTHR11675:SF112 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 9-RELATED | 2 | 373 | 0.000 |
| 2 | g2201.t3 | Pfam | PF00535 | Glycosyl transferase family 2 | 2 | 121 | 0.000 |
| 1 | g2201.t3 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 248 | 369 | 0.000 |
| 10 | g2201.t3 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 246 | 372 | 21.459 |
| 7 | g2201.t3 | SMART | SM00458 | ricin_3 | 247 | 372 | 0.000 |
| 6 | g2201.t3 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 2 | 238 | 0.000 |
| 5 | g2201.t3 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 242 | 372 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed