General information for g2205.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Circadian clock-controlled protein.
Parent gene
- The parent gene g2205 is located on chr_3: 16002634..16003622 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2205 | g2205.t1 | isoform | g2205.t1 | 16002634 | 16003622 |
| chr_3 | g2205 | g2205.t1 | exon | g2205.t1.exon1 | 16002634 | 16002923 |
| chr_3 | g2205 | g2205.t1 | cds | g2205.t1.CDS1 | 16002634 | 16002923 |
| chr_3 | g2205 | g2205.t1 | exon | g2205.t1.exon2 | 16002989 | 16003134 |
| chr_3 | g2205 | g2205.t1 | cds | g2205.t1.CDS2 | 16002989 | 16003134 |
| chr_3 | g2205 | g2205.t1 | exon | g2205.t1.exon3 | 16003194 | 16003331 |
| chr_3 | g2205 | g2205.t1 | cds | g2205.t1.CDS3 | 16003194 | 16003331 |
| chr_3 | g2205 | g2205.t1 | exon | g2205.t1.exon4 | 16003397 | 16003499 |
| chr_3 | g2205 | g2205.t1 | cds | g2205.t1.CDS4 | 16003397 | 16003499 |
| chr_3 | g2205 | g2205.t1 | exon | g2205.t1.exon5 | 16003589 | 16003622 |
| chr_3 | g2205 | g2205.t1 | cds | g2205.t1.CDS5 | 16003589 | 16003622 |
| chr_3 | g2205 | g2205.t1 | TSS | g2205.t1 | NA | NA |
| chr_3 | g2205 | g2205.t1 | TTS | g2205.t1 | NA | NA |
Sequences
>g2205.t1 Gene=g2205 Length=711
ATGCTCTGTTCGAGTAATGCAGTGGAAGAAATACCTGATTTTCTCCATATATGTCATAAA
AGCGATCCAAATCTTTCACAATGTGTCGTTAATTCTGTAAATACCCTCAAACCATTACTC
GCCACAGGAATACCAGAATATGATATAATACCATTAGAACCATTAGAATTAGGTGATTTA
CTTGTTGCTGGAAGCAAGACAGGTCAGGGTCTATCGATTAGTGCTAAAGGCGTCAAAGTT
TATGGTAGTGGCAATTTTGAAATGAAGAATTTTAAAGTAATTGAATATGCATCAAAGTAC
AACTTTCAAATTGGTCTGCCTCATCTTTATGTTCATGGAAAATACGTTGTTGATGGACGT
GTTTTGTTTTTGCCTATAACTGGGGAAGGAAATTTCACAGCAAATTTTACACAAGGACAA
GGCGAAATTCGTCTGCGTGGCGTTCATAAGGAAATTAATGGAGAAACTCATTTTGTAGTC
AACAAGTTAGACATTAAAATTACGGTACAGAAAGGCAAAATCGAGCTAGAGAATCTTTTC
GGTGGCGACAAAGCTCTTGGCGATATTATTAATACTGTCATAAATGAAAACTTTGAAACG
TTTACTCAAGATTTAATTCCACTCATTGAAAAGTCGTTATCGAGAATCTTTAAACAGACT
GGCAATAAAATATTTAAGAGATTTACTCTAGCGCAGCTATTTCCTCAATAA
>g2205.t1 Gene=g2205 Length=236
MLCSSNAVEEIPDFLHICHKSDPNLSQCVVNSVNTLKPLLATGIPEYDIIPLEPLELGDL
LVAGSKTGQGLSISAKGVKVYGSGNFEMKNFKVIEYASKYNFQIGLPHLYVHGKYVVDGR
VLFLPITGEGNFTANFTQGQGEIRLRGVHKEINGETHFVVNKLDIKITVQKGKIELENLF
GGDKALGDIINTVINENFETFTQDLIPLIEKSLSRIFKQTGNKIFKRFTLAQLFPQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2205.t1 | Gene3D | G3DSA:3.15.10.30 | - | 15 | 234 | 0 |
| 2 | g2205.t1 | PANTHER | PTHR11008 | UNCHARACTERIZED | 7 | 235 | 0 |
| 3 | g2205.t1 | PANTHER | PTHR11008:SF36 | CIRCADIAN CLOCK-CONTROLLED PROTEIN-LIKE PROTEIN | 7 | 235 | 0 |
| 1 | g2205.t1 | Pfam | PF06585 | Haemolymph juvenile hormone binding protein (JHBP) | 3 | 235 | 0 |
| 4 | g2205.t1 | SMART | SM00700 | jhbp | 9 | 236 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed