General information for g2213.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Casein kinase I isoform gamma-3.
Parent gene
- The parent gene g2213 is located on chr_3: 16030054..16036742 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2213 | g2213.t1 | TTS | g2213.t1 | 16029787 | 16029787 |
| chr_3 | g2213 | g2213.t1 | isoform | g2213.t1 | 16030054 | 16036742 |
| chr_3 | g2213 | g2213.t1 | exon | g2213.t1.exon1 | 16030054 | 16030165 |
| chr_3 | g2213 | g2213.t1 | cds | g2213.t1.CDS1 | 16030054 | 16030165 |
| chr_3 | g2213 | g2213.t1 | exon | g2213.t1.exon2 | 16030247 | 16030294 |
| chr_3 | g2213 | g2213.t1 | cds | g2213.t1.CDS2 | 16030247 | 16030294 |
| chr_3 | g2213 | g2213.t1 | exon | g2213.t1.exon3 | 16030361 | 16030467 |
| chr_3 | g2213 | g2213.t1 | cds | g2213.t1.CDS3 | 16030361 | 16030467 |
| chr_3 | g2213 | g2213.t1 | exon | g2213.t1.exon4 | 16033679 | 16033771 |
| chr_3 | g2213 | g2213.t1 | cds | g2213.t1.CDS4 | 16033679 | 16033771 |
| chr_3 | g2213 | g2213.t1 | exon | g2213.t1.exon5 | 16035560 | 16035640 |
| chr_3 | g2213 | g2213.t1 | cds | g2213.t1.CDS5 | 16035560 | 16035640 |
| chr_3 | g2213 | g2213.t1 | exon | g2213.t1.exon6 | 16036233 | 16036403 |
| chr_3 | g2213 | g2213.t1 | cds | g2213.t1.CDS6 | 16036233 | 16036403 |
| chr_3 | g2213 | g2213.t1 | exon | g2213.t1.exon7 | 16036464 | 16036742 |
| chr_3 | g2213 | g2213.t1 | cds | g2213.t1.CDS7 | 16036464 | 16036742 |
| chr_3 | g2213 | g2213.t1 | TSS | g2213.t1 | NA | NA |
Sequences
>g2213.t1 Gene=g2213 Length=891
ATGATGTGTAGTTTCGGACTTGCCAAGGAGTACATTGATTTAGACACAAATAAACATATT
CCATATCGAGAACATAAATCACTAACAGGAACTGCTCGATATATGTCAATCAATACACAT
ATGGGTAAAGAACAGTCACGACGCGATGACTTAGAAGCACTTGGTCATATGTTTATGTAT
TTTCTTCGTGGATCATTACCTTGGCAAGGATTAAAAGCAGATACATTAAAAGAACGATAT
CAGAAAATTGGTGAAACCAAGCGTGCTACTCCTATAGAAGTATTATGTGAAAATCATCCT
GAAGAATTTGCAACATACTTGCGAAGTGTTCGAAGATTAGACTTTTTCGAAACTCCTGAT
TATGAATACTACCGTAAACTATTTCAAGATCTCTTTGAGCGAAAAGGCTATGTAGACGAT
GGCGAATTCGATTGGACGGGAAAGACAATGTCAACTCCAGTGGGGTCGTTACAAACAGGA
CACGAGGTCATTGTCTCACCAAATCGCGATAAGCATACACCCGCCAATAAGACAAATAAG
GGAGGTGTTGCATGGCCTGATGTGCCGACAAACAAAGGAACACTGGGCAATCTGACGCCT
GCTGATCGGCACGGAAGCGTTCAGGTGGTGAGCTCAACAAATGGAGAATTGAATGCTGAT
GATCCAACAGCGGGACATTCAAATACACCAATAACACAGCAACAGGAAGTTGAAATGGTT
GATGACACAAAATGCTGTTGTTTCTTTAAACGAAAAAAGAAGAAGTCACCACGCACTAAT
TGCCTCAATCCATCACAGGACTTCATTCAAGCATCACAGCATACAATTCGATTTCCATCA
GCATCCGTTTTAACTTCAACACCAACCAATACACCTACACTTCCAATATAA
>g2213.t1 Gene=g2213 Length=296
MMCSFGLAKEYIDLDTNKHIPYREHKSLTGTARYMSINTHMGKEQSRRDDLEALGHMFMY
FLRGSLPWQGLKADTLKERYQKIGETKRATPIEVLCENHPEEFATYLRSVRRLDFFETPD
YEYYRKLFQDLFERKGYVDDGEFDWTGKTMSTPVGSLQTGHEVIVSPNRDKHTPANKTNK
GGVAWPDVPTNKGTLGNLTPADRHGSVQVVSSTNGELNADDPTAGHSNTPITQQQEVEMV
DDTKCCCFFKRKKKKSPRTNCLNPSQDFIQASQHTIRFPSASVLTSTPTNTPTLPI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2213.t1 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 181 | 0.000 |
| 2 | g2213.t1 | PANTHER | PTHR11909:SF151 | CASEIN KINASE I ISOFORM GAMMA-3 | 4 | 250 | 0.000 |
| 3 | g2213.t1 | PANTHER | PTHR11909 | CASEIN KINASE-RELATED | 4 | 250 | 0.000 |
| 1 | g2213.t1 | Pfam | PF12605 | Casein kinase 1 gamma C terminal | 148 | 231 | 0.000 |
| 6 | g2213.t1 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 132 | 9.701 |
| 4 | g2213.t1 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 145 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004674 | protein serine/threonine kinase activity | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
- This transcript has been annotated with K08958 (casein kinase 1, gamma)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
