Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Histone acetyltransferase KAT2A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2224 g2224.t9 isoform g2224.t9 16113856 16115285
chr_3 g2224 g2224.t9 exon g2224.t9.exon1 16113856 16114334
chr_3 g2224 g2224.t9 cds g2224.t9.CDS1 16113857 16114334
chr_3 g2224 g2224.t9 exon g2224.t9.exon2 16114402 16114846
chr_3 g2224 g2224.t9 cds g2224.t9.CDS2 16114402 16114846
chr_3 g2224 g2224.t9 exon g2224.t9.exon3 16114940 16115060
chr_3 g2224 g2224.t9 cds g2224.t9.CDS3 16114940 16114991
chr_3 g2224 g2224.t9 exon g2224.t9.exon4 16115123 16115285
chr_3 g2224 g2224.t9 TSS g2224.t9 16115506 16115506
chr_3 g2224 g2224.t9 TTS g2224.t9 NA NA

Sequences

>g2224.t9 Gene=g2224 Length=1208
ATGTCTGAGGAAAATAATAATCAGAGTAATGATTCATCTAGTGCTGGAGCGACAAGAGCG
AGCAATATTCAAAAAATTATTGACAGGAAGCAAAAGATTTTTAGTTTGCCAAGAAATTCA
AAGCTCTTCAAGATATCTACTTACAGTTTATGCCAATATGTGAGAGAAAGGATGTAAGTG
TGTTGGATTTAAATTAAGTGAAGAACAGCGAAAAAGAGATGAAGCGAGTTATATGCCGCA
AAACAAAGACCTCTGCTCTAATCCAAATTGCAATCATCCTTTTTCAAAACATGTGTGCCA
TTTAAATAGCTTAACTGATCCAGAACTTAATAGACTTTTGAATTTAATTGTGGATATGGA
AAACCTTTACATCTCAATCTCTCGCCAAAATGATTCTGACATTAAAAAAGTTTATATTTA
TTTATCAAAATTATTAAGACACCAAGTTTTGATGAAGCAAACATCGGTAGTAATACCAAC
TAATGCGAGCATGATCGGTTCACCACCATTCGAAGACCCATCAATACAAAGAATAATTTC
AAATTTTGTATTTCTCAAATATGGTCACTTTAGAGATCATCCCTCTTCAAAAATTCAATT
TCAAATTTTCACTGAATTAGCAAAGAATTTTCTTCATTGCGTGTGTACATGGGATTTTGA
AAGTCCAAATGATCGCAAAGAGTGTTCAACACCGGAAGAAGCGTCTGCATATAAAGTTAA
CTATACAAGATGGTTAATATTTTCTTGGGTCCCAGCGTTCTGCAGCAGTTTACGTCAATA
TAAAACATCAAATATTTTCGGGAAAACTTTTCTCAAGTCCATTTACAATTTCGTTTCATC
TTTGATGCTTCAAAAATACAAAGCAGATAAAGATCGAGAGAAATTACCAACTGAAAAGTT
AATTGTTTTTGATTCACTTCCAAAATTTTTGGATGATCTTCGAGAGGAAATTTCAAATGA
TAATTCTCTCATTTTTGATCCAACATTTAAGCCGGTGTTTCCACAGAATGCAATTGGAAT
AAAAAGAGAGCTCGATGCAAATTCGAATGATGATGGTCGTGTGAAAAAATTAAAGCGTGA
AAATACATGTGAAGATTTGTCAGATTTTACTGTTATCAATATTCTCGATCGCATTAATGA
TGACGATTATAAAATTAATGCTGAAGTACTAAGTTCAGTAAAATTGACAGCACGGGATGA
TGTAGCAA

>g2224.t9 Gene=g2224 Length=325
MPQNKDLCSNPNCNHPFSKHVCHLNSLTDPELNRLLNLIVDMENLYISISRQNDSDIKKV
YIYLSKLLRHQVLMKQTSVVIPTNASMIGSPPFEDPSIQRIISNFVFLKYGHFRDHPSSK
IQFQIFTELAKNFLHCVCTWDFESPNDRKECSTPEEASAYKVNYTRWLIFSWVPAFCSSL
RQYKTSNIFGKTFLKSIYNFVSSLMLQKYKADKDREKLPTEKLIVFDSLPKFLDDLREEI
SNDNSLIFDPTFKPVFPQNAIGIKRELDANSNDDGRVKKLKRENTCEDLSDFTVINILDR
INDDDYKINAEVLSSVKLTARDDVA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g2224.t9 PANTHER PTHR45750:SF1 HISTONE ACETYLTRANSFERASE KAT2A 12 252 0
3 g2224.t9 PANTHER PTHR45750 GH11602P 12 252 0
1 g2224.t9 Pfam PF06466 PCAF (P300/CBP-associated factor) N-terminal domain 4 207 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005634 nucleus CC
GO:0006355 regulation of transcription, DNA-templated BP
GO:0004402 histone acetyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed