Gene loci information

Transcript annotation

  • This transcript has been annotated as Histone acetyltransferase KAT2A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2225 g2225.t2 TTS g2225.t2 16115588 16115588
chr_3 g2225 g2225.t2 isoform g2225.t2 16115783 16116485
chr_3 g2225 g2225.t2 exon g2225.t2.exon1 16115783 16115939
chr_3 g2225 g2225.t2 cds g2225.t2.CDS1 16115783 16115939
chr_3 g2225 g2225.t2 exon g2225.t2.exon2 16115998 16116485
chr_3 g2225 g2225.t2 cds g2225.t2.CDS2 16115998 16116422
chr_3 g2225 g2225.t2 TSS g2225.t2 NA NA

Sequences

>g2225.t2 Gene=g2225 Length=645
GACATAAAACTTCCAAGATCAGAATATTTTGGTTATATTAAAGATTATGAAGGAGCTTAT
TTGATGCATTGTGAATTGCATCCTGGAATTATTTACACACAATTTAGTAGTGTAGTAAGA
AAGCAAAAAGAAATTGTTAAAGAATTATTTAAACAACGGCAGCAAGAAATGGAAAAGGTT
CATCCTGGATTGACATGTTTTAAAGAAGGTTTTCGAAGAACAATTCCCTTCGAAGCAATT
CCAGGATTGAGAGACATTTATGGCTGGAAATTGCCAAGAAATACTCCAAAACATTTGAGA
TATTCAGAAGAATTGAATGATCCAGAAGTTTTGGCAATGCAATTTAGTAATATTTTGCAA
TTGGTGAAAAATCATAAATGTGCATGGCCTTTCTTAAAACCAGTGTCTGCAGCAGAAGTT
CCAGATTATTATGATCATATAAAATATGCAATGGATTTGAAGACAATGAGTGATCGATTG
AAAGCAAGATATTACGTTACGAGACATTTATTCAAAGCAGATATGAACAGAATTTTCACC
AATTGTAAAATTTACAATTCACCTGAAACTGAATATTATCAATGTGCAGAAAAACTTGAA
ATTTATTTTAATAATAAGATGAAAGAAGCAGGATTAATGGAGTAA

>g2225.t2 Gene=g2225 Length=193
MHCELHPGIIYTQFSSVVRKQKEIVKELFKQRQQEMEKVHPGLTCFKEGFRRTIPFEAIP
GLRDIYGWKLPRNTPKHLRYSEELNDPEVLAMQFSNILQLVKNHKCAWPFLKPVSAAEVP
DYYDHIKYAMDLKTMSDRLKARYYVTRHLFKADMNRIFTNCKIYNSPETEYYQCAEKLEI
YFNNKMKEAGLME

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g2225.t2 CDD cd05509 Bromo_gcn5_like 93 188 3.56944E-51
9 g2225.t2 Gene3D G3DSA:1.20.920.10 Histone Acetyltransferase; Chain A 78 193 2.8E-37
2 g2225.t2 PANTHER PTHR45750:SF2 HISTONE ACETYLTRANSFERASE KAT2B 1 193 4.7E-68
3 g2225.t2 PANTHER PTHR45750 GH11602P 1 193 4.7E-68
6 g2225.t2 PRINTS PR00503 Bromodomain signature 105 118 6.1E-17
7 g2225.t2 PRINTS PR00503 Bromodomain signature 119 135 6.1E-17
4 g2225.t2 PRINTS PR00503 Bromodomain signature 135 153 6.1E-17
5 g2225.t2 PRINTS PR00503 Bromodomain signature 153 172 6.1E-17
1 g2225.t2 Pfam PF00439 Bromodomain 95 177 4.5E-22
11 g2225.t2 ProSitePatterns PS00633 Bromodomain signature. 107 164 -
13 g2225.t2 ProSiteProfiles PS50014 Bromodomain profile. 102 172 19.068
12 g2225.t2 SMART SM00297 bromo_6 83 191 6.2E-38
8 g2225.t2 SUPERFAMILY SSF47370 Bromodomain 74 188 1.83E-35

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0004402 histone acetyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values