General information for g223.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g223 is located on chr_3: 1863487..1870063 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g223 | g223.t2 | TTS | g223.t2 | 1861965 | 1861965 |
| chr_3 | g223 | g223.t2 | isoform | g223.t2 | 1862991 | 1863836 |
| chr_3 | g223 | g223.t2 | exon | g223.t2.exon1 | 1862991 | 1863836 |
| chr_3 | g223 | g223.t2 | cds | g223.t2.CDS1 | 1863487 | 1863816 |
| chr_3 | g223 | g223.t2 | TSS | g223.t2 | NA | NA |
Sequences
>g223.t2 Gene=g223 Length=846
GTTTTATTTTTCAAAATGTTATGCGTACTGTACAAAAGCAAGTAAGAGCAGTTTTTCAGC
AAAAGAGAACCAAATGCCATGCTGAAATCATTGAAAATCTTGTTTTAAATTATTTTCCAA
TCGTAAAGAAAACTGTGCAAGATTTAACTCCCAAAATCATCATGCATTCAATGGTCAATG
ACATGTGTGACAATATATATAGTATGCTGATGGTTTTGTATAAAGACATTCATGATTTAA
TGAACGAGTCTAAAGATAACACTGATAAACGTAATGAAGCAAAGGATATGTTGAAAGCTC
TAAAAATTGCTGATTCAACTATAAATCAAGTTTATGAAACTGAAATTTAAGTGAAAAAAC
AATTTGCACACAAAAGTTCCTATTTTTTTACATTAAGTATTAAAAGCACTAAAGTCATTC
TTAAAACATTTTGCTAAATCCACAAAATATTTGATTCAATATAAAAATTTCATAAAAAAT
GTTTCATATAATTTTAATTACTTTTTAGTTAAAAACTATGTATCATGTGCGACGATAAAT
AATATTTTATGTTCAAACAAAGAGAATAAGTATTCAAACAAATAAAAATACATTTTAAGA
CAAATTATCTTATATTACTGTTTCTATAAACAATCACATTTCAGTCATTCATAATGAGTC
AATATTCTTCAAATTTCATCTATTTCGAGAAATTCGATAAATGTTAAACTGTTGCAACAA
ATTGTTTGAAAGCCACACATGCTTATGATTCTTTCAAAAATTTTATTCTCTCTCTTAGTA
ATTGATTATTTATACTTTAATAAGCTCAACGTATATAAAATATTTAAATGAAAGTTGCAC
TGCTCG
>g223.t2 Gene=g223 Length=109
MRTVQKQVRAVFQQKRTKCHAEIIENLVLNYFPIVKKTVQDLTPKIIMHSMVNDMCDNIY
SMLMVLYKDIHDLMNESKDNTDKRNEAKDMLKALKIADSTINQVYETEI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g223.t2 | Gene3D | G3DSA:1.20.120.1240 | - | 15 | 75 | 0.000 |
| 5 | g223.t2 | Gene3D | G3DSA:3.40.50.300 | - | 76 | 98 | 0.000 |
| 2 | g223.t2 | PANTHER | PTHR11566:SF39 | DYNAMIN-1-LIKE PROTEIN | 16 | 108 | 0.000 |
| 3 | g223.t2 | PANTHER | PTHR11566 | DYNAMIN | 16 | 108 | 0.000 |
| 1 | g223.t2 | Pfam | PF02212 | Dynamin GTPase effector domain | 17 | 104 | 0.000 |
| 7 | g223.t2 | ProSiteProfiles | PS51388 | GED domain profile. | 21 | 109 | 17.238 |
| 4 | g223.t2 | SMART | SM00302 | GED_2 | 16 | 104 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
| GO:0016559 | peroxisome fission | BP |
| GO:0003924 | GTPase activity | MF |
| GO:0000266 | mitochondrial fission | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
