General information for g2241.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2241 is located on chr_3: 16257188..16258428 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2241 | g2241.t2 | isoform | g2241.t2 | 16256854 | 16258428 |
| chr_3 | g2241 | g2241.t2 | exon | g2241.t2.exon1 | 16256854 | 16258428 |
| chr_3 | g2241 | g2241.t2 | cds | g2241.t2.CDS1 | 16257526 | 16258428 |
| chr_3 | g2241 | g2241.t2 | TSS | g2241.t2 | 16258559 | 16258559 |
| chr_3 | g2241 | g2241.t2 | TTS | g2241.t2 | NA | NA |
Sequences
>g2241.t2 Gene=g2241 Length=1575
ATGAAGGATAGGCGTAAGAAGAGGCGGATTTCACCAAAAAACAATTTGCAAAATAAAGCA
AAAAAAATTAAGAGTATTGATAAAGATAACCTCAAAAATTCTCAAGTTGAAAATGATAAA
GCTGAAGAGTCAAATTCTGATTTTGATTCAATTTCATTAAAATCAATCTCTCAAAGTGAC
GCAAATATTCAATCAAATCAAGGAAAATCTATTAAAGTGAAACCGATAATTGTTGACAGT
TCCTTATTAGCAGTAAGAAATTTGCTCAATAATTTACAACTAAAATCCAAGCCATTATTA
AAACTAGCTGATAAAAGAATTCAAATAAACTGTTCATCCATAGAAGACAAGATTACTATC
ATGAACAAGTTGAAAAGTCAGCAATATAAATATTTTTCTTTTACTGAATCCAGTGACAAA
TCCAAAATTGTCCTTCTCAAAGGATTTTATCTGGATAGCAACTTTGATATCAAGTCTCAA
ACAGAAAGTTTGAAAAATATTCTCAGTGAAAGTGACTTAAAAGTTGGAAACGTGAAAGTT
TTTTACAAAAAAGAAGATTATGCAATTTTTTCAATTCAACTTCAAGAATATATATCCATC
AAGGAATTGAATTTTCGATACAAAAGCATTGATTCAGTTATTGTCAGATGGGAGCCTCTC
AATAGAGAGAAGAAATTGCCAGTTCAATGTTTCAAATTTGTCAGCAATGGGGTCACTCCT
CTGTCAATTGTGGATTTCCTTCAAGATGCGTCAAATGTGATGAAAATCACCCTGTCGGTC
AATGCAAGAGAGTTAACAAGGAAATCGGTAGTCCGAAGTGTGTCAATTGCAAAGGAGAAC
ATCCAGCAAATTACAAGAGATGTCCAATTTTTCTTAATCACCAAAAAAAGATTGATGATA
TGAAGAAAAAATCGACAAAAATCAACACTAAGTTTGCAGCTCAACATAGAATTAGAAGTA
GTCAGCAGATATTTAATGATGAGGATTTTCCACCCCTTATTAATCTCAGTTCTCCAGTTA
TTAATAATGTACAGGTGAGCTCAAACCATTCCCAATCAAGAAGTGATCCTTTGTTGAAAA
ATTTCCGTGAAGCATGTGAAGAATTTAAGAATCTTCCAAGCATTAGAAATTCAATGGCCA
TTTTCATTGATTTTGTTGGAAAATTAAAATTAGCTAAATCAGAAGCCGAAAGACAGATGT
TGTTAGCAACTCATCTTTTTGATTTCAATTATGAAACTTAATTTCCTATTATGAATGCTC
ATTCTGTTCACAACAAAGAAGATCACTCTCTAATTGCGGGTGGTTTGAAGCACAACCTAC
CATTAGCAGTTTAATCTGTCTTTCTTTTTTCTTACTTTTTTATCTTTTTATTTAATTGTT
ACAAGAATTTGAGTTTTTTTTAACTTTTCTCATGCAACACACTTTACTTAAACAAATTTC
ACTTAACTTTATATTAGACACTCTATATAACTGATTTAAGACTAATTAGTCAATATCACA
AACATTTCATGTAGCATTAGGATTTATGCAATTTCAAATCAATTTTGTCAATAAAAATTA
TCTATCTATCTAAAT
>g2241.t2 Gene=g2241 Length=300
MKDRRKKRRISPKNNLQNKAKKIKSIDKDNLKNSQVENDKAEESNSDFDSISLKSISQSD
ANIQSNQGKSIKVKPIIVDSSLLAVRNLLNNLQLKSKPLLKLADKRIQINCSSIEDKITI
MNKLKSQQYKYFSFTESSDKSKIVLLKGFYLDSNFDIKSQTESLKNILSESDLKVGNVKV
FYKKEDYAIFSIQLQEYISIKELNFRYKSIDSVIVRWEPLNREKKLPVQCFKFVSNGVTP
LSIVDFLQDASNVMKITLSVNARELTRKSVVRSVSIAKENIQQITRDVQFFLITKKRLMI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2241.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - |
| 3 | g2241.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - |
| 1 | g2241.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 46 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
## Warning: Removed 1 row(s) containing missing values (geom_path).
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
