Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2248 g2248.t6 isoform g2248.t6 16275637 16276285
chr_3 g2248 g2248.t6 exon g2248.t6.exon1 16275637 16276035
chr_3 g2248 g2248.t6 cds g2248.t6.CDS1 16275660 16276035
chr_3 g2248 g2248.t6 exon g2248.t6.exon2 16276098 16276285
chr_3 g2248 g2248.t6 cds g2248.t6.CDS2 16276098 16276285
chr_3 g2248 g2248.t6 TTS g2248.t6 16276368 16276368
chr_3 g2248 g2248.t6 TSS g2248.t6 NA NA

Sequences

>g2248.t6 Gene=g2248 Length=587
GCTATGAAACAAGTTCAACATTGATGACTTTCATACTTTATGAGCTTGCACTTAATCCAG
ACATTCAACAAAAATTAAGAGATGAAATTGAATCAAGAATTGAAGAAAATGATGGAAAAT
TAACTTATGAAATGTTGAATGAGCTTAAATTTCTTGACATGGTGACTAATGAAACTTTAA
GAAAATATCCACCAATTGCAAGTGGCATTAGACTTTGCAACAAAGACTACGAAATTCCTG
GTACAAATTTAACTATTTCTTCAGGAATTCCTGTTCAAATAAACACTTATTCACTTCATC
ATGATCCTGATTATTTTCCAAATCCAAACACATTTGATCCTGAAAGATTTAATGAAGAAA
ATTTTAAAAATATCAAGCCATACACTTATGCACCATTTGGATATGGACCAAGAATCTGTA
TAGGAATGAGGTTTGGTCTGATGCAATCAAAAATTGGTATTGCAAAATTAGTGGCAAATT
TTTCATTTTCTCCTTGTGAAAAGACAATGATTCCGATGAAATATTCAACCACTAATCCAT
TCATGGCTCCACAAAACGGTATGTGGTTGAAAGTTGAGAGAATTTGA

>g2248.t6 Gene=g2248 Length=187
MTFILYELALNPDIQQKLRDEIESRIEENDGKLTYEMLNELKFLDMVTNETLRKYPPIAS
GIRLCNKDYEIPGTNLTISSGIPVQINTYSLHHDPDYFPNPNTFDPERFNEENFKNIKPY
TYAPFGYGPRICIGMRFGLMQSKIGIAKLVANFSFSPCEKTMIPMKYSTTNPFMAPQNGM
WLKVERI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g2248.t6 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 187 8.1E-70
2 g2248.t6 PANTHER PTHR24292 CYTOCHROME P450 1 185 2.0E-74
4 g2248.t6 PRINTS PR00463 E-class P450 group I signature 1 26 2.2E-18
9 g2248.t6 PRINTS PR00385 P450 superfamily signature 10 23 3.4E-10
10 g2248.t6 PRINTS PR00385 P450 superfamily signature 46 57 3.4E-10
6 g2248.t6 PRINTS PR00463 E-class P450 group I signature 87 111 2.2E-18
3 g2248.t6 PRINTS PR00463 E-class P450 group I signature 122 132 2.2E-18
7 g2248.t6 PRINTS PR00385 P450 superfamily signature 123 132 3.4E-10
5 g2248.t6 PRINTS PR00463 E-class P450 group I signature 132 155 2.2E-18
8 g2248.t6 PRINTS PR00385 P450 superfamily signature 132 143 3.4E-10
1 g2248.t6 Pfam PF00067 Cytochrome P450 1 179 8.4E-60
12 g2248.t6 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 125 134 -
11 g2248.t6 SUPERFAMILY SSF48264 Cytochrome P450 1 185 5.63E-65

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values