Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2249 g2249.t5 isoform g2249.t5 16277711 16278663
chr_3 g2249 g2249.t5 exon g2249.t5.exon1 16277711 16278010
chr_3 g2249 g2249.t5 cds g2249.t5.CDS1 16277998 16278010
chr_3 g2249 g2249.t5 exon g2249.t5.exon2 16278074 16278663
chr_3 g2249 g2249.t5 cds g2249.t5.CDS2 16278074 16278663
chr_3 g2249 g2249.t5 TTS g2249.t5 16278750 16278750
chr_3 g2249 g2249.t5 TSS g2249.t5 NA NA

Sequences

>g2249.t5 Gene=g2249 Length=890
GCTTAGAAGATGAAAATTCTGAATTTTTAAAACATGGTAGAAGACTTTTTGATTTGACAC
CTTTTGAAACATTAAAATTTTTCTTCACAATTGGCTGTCCAAATTTTTGTAGAAAATTAG
GAGTCAGAACAAATCCAAAAGAACCAACAGATTTTTTCCTAAAAACATTTTTGGAAACAT
TTGAATATCGCGAGAAAAACAATATTCAGAGAAATGATTTTGTTTCACTATTGCTTGGAT
TGAAAGAATTATTGACACCAATTGAATTAGCAGCTGAGGCATTTTTGATGTTTGCAGCTG
GATATGAAACAAGTTCAACATTGATGACTTTCATACTTTATGAGCTTGCACTTAATCCAG
ACATTCAACAAAAATTAAGAGATGAAATTGTTACAAGAATTGAGGAAAATGATGGAAAAT
TAACTTATGAAATGTTGAATGAATTCAAATATCTTGACATGGTGACTAATGAAACTTTAA
GAAAATATCCTCCGATTCCGAATAATATTCGAATGTGCACAAAAGATTACAAAATTGAAG
AGCTTAATTTGACTATTCCTAAAGGAACAGCCATTGAATTGCCAGTTTATTCACTTCAAC
ACGATCCTGAATATTTTCCAAATCCAAACACATTTGATCCTGAAAGATTTAACGATGAAA
ATGTCAAAAATATCAAACAATTTACATTCTTTCCATTTGGAGAAGGCAAAAGACAATGTT
TAGGTTTAAGATTTGGTCTGATGCAAACCAAAATGGGCATTGCAAAATTGTTAATAAATT
ATTCATTTTCATCTTGTGAAAAGACCATAATTCCAATGAAATTTGTACCAAGTGCTCCTT
TTTTGCAACCAAAAGGTGGATTGTGGTTGAAAGTTGAAAAAATTTTATAA

>g2249.t5 Gene=g2249 Length=200
MFAAGYETSSTLMTFILYELALNPDIQQKLRDEIVTRIEENDGKLTYEMLNEFKYLDMVT
NETLRKYPPIPNNIRMCTKDYKIEELNLTIPKGTAIELPVYSLQHDPEYFPNPNTFDPER
FNDENVKNIKQFTFFPFGEGKRQCLGLRFGLMQTKMGIAKLLINYSFSSCEKTIIPMKFV
PSAPFLQPKGGLWLKVEKIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g2249.t5 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 199 1.9E-73
2 g2249.t5 PANTHER PTHR24292 CYTOCHROME P450 1 197 9.0E-80
8 g2249.t5 PRINTS PR00385 P450 superfamily signature 4 21 2.3E-11
7 g2249.t5 PRINTS PR00463 E-class P450 group I signature 13 39 9.6E-20
6 g2249.t5 PRINTS PR00463 E-class P450 group I signature 57 75 9.6E-20
11 g2249.t5 PRINTS PR00385 P450 superfamily signature 58 69 2.3E-11
3 g2249.t5 PRINTS PR00463 E-class P450 group I signature 99 123 9.6E-20
5 g2249.t5 PRINTS PR00463 E-class P450 group I signature 134 144 9.6E-20
10 g2249.t5 PRINTS PR00385 P450 superfamily signature 135 144 2.3E-11
4 g2249.t5 PRINTS PR00463 E-class P450 group I signature 144 167 9.6E-20
9 g2249.t5 PRINTS PR00385 P450 superfamily signature 144 155 2.3E-11
1 g2249.t5 Pfam PF00067 Cytochrome P450 1 191 6.9E-65
13 g2249.t5 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 137 146 -
12 g2249.t5 SUPERFAMILY SSF48264 Cytochrome P450 1 197 8.38E-72

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values