General information for g225.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g225 is located on chr_3: 1871164..1871929 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g225 | g225.t1 | isoform | g225.t1 | 1871164 | 1871929 |
| chr_3 | g225 | g225.t1 | exon | g225.t1.exon1 | 1871164 | 1871226 |
| chr_3 | g225 | g225.t1 | cds | g225.t1.CDS1 | 1871164 | 1871226 |
| chr_3 | g225 | g225.t1 | exon | g225.t1.exon2 | 1871344 | 1871770 |
| chr_3 | g225 | g225.t1 | cds | g225.t1.CDS2 | 1871344 | 1871770 |
| chr_3 | g225 | g225.t1 | exon | g225.t1.exon3 | 1871841 | 1871929 |
| chr_3 | g225 | g225.t1 | cds | g225.t1.CDS3 | 1871841 | 1871929 |
| chr_3 | g225 | g225.t1 | TSS | g225.t1 | NA | NA |
| chr_3 | g225 | g225.t1 | TTS | g225.t1 | NA | NA |
Sequences
>g225.t1 Gene=g225 Length=579
ATGGTTATATGTGACTACTATTTAAGAGGTATATGTAGATTCGGGAACGACTGTTGGAAT
GAACATCCTACTAAAAAGATTGATTTAAACAATAACATAGATAGCATAAATAAGGAAAGC
ATCAGCAAAATAAAACCAATATTCTCAGATGATAAATTACGTGTATTAAAAACTGATATG
AAAGAATTGAAAAATGACTTAAGAAGTCTTTTTAGAGCTTTTTCTTTTTCAAATAATTCA
GATCAAGAACAAAAGAATTCAAAGTCACCAACTATTTTTGGGTCAAAAAATAATCTACAA
ATACCAACATCAAACATTCCTTCTATTAAATTTACGATAGGAACATCCAACAAAAAACCT
TGTGAAGAAGGAAAAGAAAAGCATAATAATCGCTCTCGCTATAATATATACTTTTCAAGA
GAAAAACTAATTCCTGAAGTTAAAAAATTACCATTATCACACATTGAAACAGAATCATTT
GAAGGAAATCTTTTTGAGACAAACGAAATCAAAGAAATTAATATGAAAGAATTAATCAGT
GCCATTAATAAACTTCAAGATGTGTTCAACAACGCTTAA
>g225.t1 Gene=g225 Length=192
MVICDYYLRGICRFGNDCWNEHPTKKIDLNNNIDSINKESISKIKPIFSDDKLRVLKTDM
KELKNDLRSLFRAFSFSNNSDQEQKNSKSPTIFGSKNNLQIPTSNIPSIKFTIGTSNKKP
CEEGKEKHNNRSRYNIYFSREKLIPEVKKLPLSHIETESFEGNLFETNEIKEINMKELIS
AINKLQDVFNNA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g225.t1 | Coils | Coil | Coil | 53 | 73 | - |
| g225.t1 | ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 1 | 25 | 12.192 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046872 | metal ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
