Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock protein 90.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2254 g2254.t19 TSS g2254.t19 16306870 16306870
chr_3 g2254 g2254.t19 isoform g2254.t19 16306986 16309500
chr_3 g2254 g2254.t19 exon g2254.t19.exon1 16306986 16307013
chr_3 g2254 g2254.t19 exon g2254.t19.exon2 16307293 16308844
chr_3 g2254 g2254.t19 cds g2254.t19.CDS1 16307293 16308844
chr_3 g2254 g2254.t19 exon g2254.t19.exon3 16308908 16309500
chr_3 g2254 g2254.t19 cds g2254.t19.CDS2 16308908 16309500
chr_3 g2254 g2254.t19 TTS g2254.t19 16309725 16309725

Sequences

>g2254.t19 Gene=g2254 Length=2173
TCATAAAAGCAGAAAATCAAAAAGAAAAATGCCAGCAGAAGCAGAAGTTTTCCAATTTCA
AGCTGAAATAGCTCAGCTTATGTCACTTATTATCAACACCTTTTATTCAAACAAGGAGAT
TTTCTTGCGTGAATTGATCTCAAATTCATCTGATGCTCTCGATAAAATCCGTTATGAATC
ACTCACTGAACCTTCAAAATTGGATTCAGGAAAGGAACTTTTTATTAAGATTATTCCAAA
CAAAGAGGCCCGTACTTTGACAATTATCGATACTGGTATTGGTATGACAAAGTCTGATCT
CGTAAACAATCTTGGAACAATCGCTCGCTCAGGCACAAAAGCCTTTATGGAAGCTTTACA
AGCTGGCGCTGATATCTCTATGATTGGTCAATTTGGTGTCGGTTTCTATTCTGCATACTT
GGTTGCTGACAAAGTCACAGTTCACTCAAAGAACAACGATGATGAGCAATATGTTTGGGA
ATCATCAGCTGGTGGTAGTTTTACAATTGCAGTTGATGAAGGTGAGCCATTAGGTCGTGG
TACAAAGATTGTTTTGCACATTAAAGAAGATCAGACTGAATACTTGGAAGAGTCAAAGAT
CAAGTCGATTGTCACAAAACACTCACAATTCATTGGCTATCCAATTAAATTGCTCGTTGA
AAAAGAACGCGAGAAGGAAGTTAGTGATGATGAAGCTGAACCAGAAGAAGACAAAGAAAA
GAAAGAAGGTGATGAGCCTAAGATTGAAGATGTTGGTGATGATGAAGATGCAGATAAGGC
TGATAAGGAAAAGAAGAAGAAAACAGTTAAAGTTAAGTATACTGAAGATGAGGAACTCAA
CAAAACAAAACCAATTTGGACACGTAACCCAGATGACATCACTGCTGAAGAATATGGTGA
ATTCTACAAGAGCTTGACAAATGATTGGGAAGATCATTTGGCTGTTAAACATTTCTCAGT
TGAAGGACAACTCGAATTCCGTGCTCTTCTCTTTGTTCCACGTCGTATTCCATTTGATCT
CTTTGAAGCTAAGAAAAAGAAGAACAACATCAAATTATACGTCAGACGTGTATTTATCAT
GGACAACTGTGAAGATCTTATTCCAGATTATTTGAATTTCATGAAAGGTGTTGTTGACTC
AGAAGATTTGCCATTGAACATTTCTCGTGAAATGTTGCAACAGAACAAGATTCTTAAAGT
CATCCGCAAAAATCTCGTTAAGAAATGCTTAGAATTATTCGAAGAATTAGCAGAAGATAA
GGAAAATTACAAGAAATTCTATAGCCAATTCAGTAAAAACTTGAAATTAGGTGTTCATGA
AGATTCAACAAATCGCGCAAAATTGGCTGATTTACTTCGCTTCCAAACATCTGCATCAGG
TGATGAAAGCTGCTCACTTGGCGATTATGTTGGTCGCATGAAGGAGAATCAAAAATCTAT
TTACTTCATTACTGGTGAGAGCAAAGAACAAGTAAGCAATTCAGCATTTGTTGAACGTGT
CAAGAAACGTGGATTTGAAGTTGTTTACATGACTGAACCAATTGATGAATACGTCATTCA
GCAACTTAAAGAATATCAAGGCAAACAACTTGTTTGTGTAACAAAGGAAGGTCTTGAATT
GCCAGAAGATGAGGAAGAGAAGAAGAAGCGTGAAGAAGATAAGGCCAAATTCGAAAATCT
CTGCAAAGTCATGAAATCAGTTTTAGATAACAAAGTTGAAAAAGTTATTGTATCAAATCG
TTTGGTAGAATCACCATGCTGCATTGTCACATCTCAATATGGCTGGTCTGCTAATATGGA
GCGTATCATGAAAGCACAAGCTCTACGTGATACAACAACAATGGGTTACATGGCTGGTAA
AAAACATCTTGAAATCAATCCAGACCATCCAATCATCGAGACATTGCGTCAAAAGGCTGA
AGCCGACAAGAACGATAAGGCTGTTAAAGATTTGTGCATTTTACTCTTCGAGACTTCATT
ACTAAGCTCAGGTTTTTCACTTGATGAACCACAAGTTCATGCTGCTAGAATTTATCGTAT
GATCAAACTCGGTTTGGGAATTGATGAAGATGAACCAATGGCTACTGAAGAACCTGCTGC
AGCAGCTTCATCAGATATGCCACCACTTGTAGATGATGCTGAAGATGCTTCACATATGGA
AGAAGTTGATTAA

>g2254.t19 Gene=g2254 Length=714
MPAEAEVFQFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTEPSKLDS
GKELFIKIIPNKEARTLTIIDTGIGMTKSDLVNNLGTIARSGTKAFMEALQAGADISMIG
QFGVGFYSAYLVADKVTVHSKNNDDEQYVWESSAGGSFTIAVDEGEPLGRGTKIVLHIKE
DQTEYLEESKIKSIVTKHSQFIGYPIKLLVEKEREKEVSDDEAEPEEDKEKKEGDEPKIE
DVGDDEDADKADKEKKKKTVKVKYTEDEELNKTKPIWTRNPDDITAEEYGEFYKSLTNDW
EDHLAVKHFSVEGQLEFRALLFVPRRIPFDLFEAKKKKNNIKLYVRRVFIMDNCEDLIPD
YLNFMKGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFEELAEDKENYKKFYSQ
FSKNLKLGVHEDSTNRAKLADLLRFQTSASGDESCSLGDYVGRMKENQKSIYFITGESKE
QVSNSAFVERVKKRGFEVVYMTEPIDEYVIQQLKEYQGKQLVCVTKEGLELPEDEEEKKK
REEDKAKFENLCKVMKSVLDNKVEKVIVSNRLVESPCCIVTSQYGWSANMERIMKAQALR
DTTTMGYMAGKKHLEINPDHPIIETLRQKAEADKNDKAVKDLCILLFETSLLSSGFSLDE
PQVHAARIYRMIKLGLGIDEDEPMATEEPAAAASSDMPPLVDDAEDASHMEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
22 g2254.t19 CDD cd16927 HATPase_Hsp90-like 16 202 2.7804E-114
18 g2254.t19 Gene3D G3DSA:3.30.565.10 - 6 210 4.9E-104
20 g2254.t19 Gene3D G3DSA:3.30.70.2140 - 211 257 4.9E-104
19 g2254.t19 Gene3D G3DSA:3.30.230.80 - 271 439 1.4E-82
16 g2254.t19 Gene3D G3DSA:3.40.50.11260 - 440 526 1.1E-35
17 g2254.t19 Gene3D G3DSA:1.20.120.790 - 527 676 1.0E-67
5 g2254.t19 Hamap MF_00505 Chaperone protein HtpG [htpG]. 3 673 26.918135
26 g2254.t19 MobiDBLite mobidb-lite consensus disorder prediction 213 258 -
25 g2254.t19 MobiDBLite mobidb-lite consensus disorder prediction 683 714 -
3 g2254.t19 PANTHER PTHR11528:SF79 HEAT SHOCK PROTEIN HSP 90-BETA-RELATED 4 711 0.0
4 g2254.t19 PANTHER PTHR11528 HEAT SHOCK PROTEIN 90 FAMILY MEMBER 4 711 0.0
21 g2254.t19 PIRSF PIRSF002583 HSP90_HTPG 2 714 4.4E-257
12 g2254.t19 PRINTS PR00775 90kDa heat shock protein signature 6 26 5.3E-82
8 g2254.t19 PRINTS PR00775 90kDa heat shock protein signature 27 49 5.3E-82
9 g2254.t19 PRINTS PR00775 90kDa heat shock protein signature 76 93 5.3E-82
6 g2254.t19 PRINTS PR00775 90kDa heat shock protein signature 94 111 5.3E-82
7 g2254.t19 PRINTS PR00775 90kDa heat shock protein signature 119 141 5.3E-82
11 g2254.t19 PRINTS PR00775 90kDa heat shock protein signature 170 187 5.3E-82
10 g2254.t19 PRINTS PR00775 90kDa heat shock protein signature 188 206 5.3E-82
2 g2254.t19 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 181 3.4E-14
1 g2254.t19 Pfam PF00183 Hsp90 protein 184 689 1.1E-231
24 g2254.t19 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 26 35 -
23 g2254.t19 SMART SM00387 HKATPase_4 28 182 1.9E-8
14 g2254.t19 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 6 214 5.37E-74
13 g2254.t19 SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like 272 527 6.52E-109
15 g2254.t19 SUPERFAMILY SSF110942 HSP90 C-terminal domain 550 672 8.24E-39

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values