Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock protein 83.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2254 g2254.t20 TSS g2254.t20 16306870 16306870
chr_3 g2254 g2254.t20 isoform g2254.t20 16306986 16309884
chr_3 g2254 g2254.t20 exon g2254.t20.exon1 16306986 16307013
chr_3 g2254 g2254.t20 exon g2254.t20.exon2 16307293 16308054
chr_3 g2254 g2254.t20 cds g2254.t20.CDS1 16307293 16308054
chr_3 g2254 g2254.t20 exon g2254.t20.exon3 16309870 16309884
chr_3 g2254 g2254.t20 cds g2254.t20.CDS2 16309870 16309884
chr_3 g2254 g2254.t20 TTS g2254.t20 NA NA

Sequences

>g2254.t20 Gene=g2254 Length=805
TCATAAAAGCAGAAAATCAAAAAGAAAAATGCCAGCAGAAGCAGAAGTTTTCCAATTTCA
AGCTGAAATAGCTCAGCTTATGTCACTTATTATCAACACCTTTTATTCAAACAAGGAGAT
TTTCTTGCGTGAATTGATCTCAAATTCATCTGATGCTCTCGATAAAATCCGTTATGAATC
ACTCACTGAACCTTCAAAATTGGATTCAGGAAAGGAACTTTTTATTAAGATTATTCCAAA
CAAAGAGGCCCGTACTTTGACAATTATCGATACTGGTATTGGTATGACAAAGTCTGATCT
CGTAAACAATCTTGGAACAATCGCTCGCTCAGGCACAAAAGCCTTTATGGAAGCTTTACA
AGCTGGCGCTGATATCTCTATGATTGGTCAATTTGGTGTCGGTTTCTATTCTGCATACTT
GGTTGCTGACAAAGTCACAGTTCACTCAAAGAACAACGATGATGAGCAATATGTTTGGGA
ATCATCAGCTGGTGGTAGTTTTACAATTGCAGTTGATGAAGGTGAGCCATTAGGTCGTGG
TACAAAGATTGTTTTGCACATTAAAGAAGATCAGACTGAATACTTGGAAGAGTCAAAGAT
CAAGTCGATTGTCACAAAACACTCACAATTCATTGGCTATCCAATTAAATTGCTCGTTGA
AAAAGAACGCGAGAAGGAAGTTAGTGATGATGAAGCTGAACCAGAAGAAGACAAAGAAAA
GAAAGAAGGTGATGAGCCTAAGATTGAAGATGTTGGTGATGATGAAGATGCAGATAAGGC
TGATAAGGAAAAATTTCTTCTGCAT

>g2254.t20 Gene=g2254 Length=259
MPAEAEVFQFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTEPSKLDS
GKELFIKIIPNKEARTLTIIDTGIGMTKSDLVNNLGTIARSGTKAFMEALQAGADISMIG
QFGVGFYSAYLVADKVTVHSKNNDDEQYVWESSAGGSFTIAVDEGEPLGRGTKIVLHIKE
DQTEYLEESKIKSIVTKHSQFIGYPIKLLVEKEREKEVSDDEAEPEEDKEKKEGDEPKIE
DVGDDEDADKADKEKFLLH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g2254.t20 CDD cd16927 HATPase_Hsp90-like 16 202 2.7912E-117
13 g2254.t20 Gene3D G3DSA:3.30.565.10 - 6 210 3.5E-105
14 g2254.t20 Gene3D G3DSA:3.30.70.2140 - 211 254 3.5E-105
18 g2254.t20 MobiDBLite mobidb-lite consensus disorder prediction 213 259 -
3 g2254.t20 PANTHER PTHR11528:SF79 HEAT SHOCK PROTEIN HSP 90-BETA-RELATED 4 255 4.8E-131
4 g2254.t20 PANTHER PTHR11528 HEAT SHOCK PROTEIN 90 FAMILY MEMBER 4 255 4.8E-131
11 g2254.t20 PRINTS PR00775 90kDa heat shock protein signature 6 26 1.1E-84
7 g2254.t20 PRINTS PR00775 90kDa heat shock protein signature 27 49 1.1E-84
8 g2254.t20 PRINTS PR00775 90kDa heat shock protein signature 76 93 1.1E-84
5 g2254.t20 PRINTS PR00775 90kDa heat shock protein signature 94 111 1.1E-84
6 g2254.t20 PRINTS PR00775 90kDa heat shock protein signature 119 141 1.1E-84
10 g2254.t20 PRINTS PR00775 90kDa heat shock protein signature 170 187 1.1E-84
9 g2254.t20 PRINTS PR00775 90kDa heat shock protein signature 188 206 1.1E-84
2 g2254.t20 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 181 3.7E-15
1 g2254.t20 Pfam PF00183 Hsp90 protein 184 253 1.7E-14
16 g2254.t20 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 26 35 -
17 g2254.t20 SMART SM00387 HKATPase_4 28 182 1.9E-8
12 g2254.t20 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 6 214 3.93E-75

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed