Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock protein 90.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2254 g2254.t22 TSS g2254.t22 16306870 16306870
chr_3 g2254 g2254.t22 isoform g2254.t22 16307377 16309500
chr_3 g2254 g2254.t22 exon g2254.t22.exon1 16307377 16308844
chr_3 g2254 g2254.t22 cds g2254.t22.CDS1 16307548 16308844
chr_3 g2254 g2254.t22 exon g2254.t22.exon2 16308908 16309500
chr_3 g2254 g2254.t22 cds g2254.t22.CDS2 16308908 16309500
chr_3 g2254 g2254.t22 TTS g2254.t22 16309725 16309725

Sequences

>g2254.t22 Gene=g2254 Length=2061
AAGGAGATTTTCTTGCGTGAATTGATCTCAAATTCATCTGATGCTCTCGATAAAATCCGT
TATGAATCACTCACTGAACCTTCAAAATTGGATTCAGGAAAGGAACTTTTTATTAAGATT
ATTCCAAACAAAGAGGCCCGTACTTTGACAATTATCGATACTGGTATTGGTATGACAAAG
TCTGATCTCGTAAACAATCTTGGAACAATCGCTCGCTCAGGCACAAAAGCCTTTATGGAA
GCTTTACAAGCTGGCGCTGATATCTCTATGATTGGTCAATTTGGTGTCGGTTTCTATTCT
GCATACTTGGTTGCTGACAAAGTCACAGTTCACTCAAAGAACAACGATGATGAGCAATAT
GTTTGGGAATCATCAGCTGGTGGTAGTTTTACAATTGCAGTTGATGAAGGTGAGCCATTA
GGTCGTGGTACAAAGATTGTTTTGCACATTAAAGAAGATCAGACTGAATACTTGGAAGAG
TCAAAGATCAAGTCGATTGTCACAAAACACTCACAATTCATTGGCTATCCAATTAAATTG
CTCGTTGAAAAAGAACGCGAGAAGGAAGTTAGTGATGATGAAGCTGAACCAGAAGAAGAC
AAAGAAAAGAAAGAAGGTGATGAGCCTAAGATTGAAGATGTTGGTGATGATGAAGATGCA
GATAAGGCTGATAAGGAAAAGAAGAAGAAAACAGTTAAAGTTAAGTATACTGAAGATGAG
GAACTCAACAAAACAAAACCAATTTGGACACGTAACCCAGATGACATCACTGCTGAAGAA
TATGGTGAATTCTACAAGAGCTTGACAAATGATTGGGAAGATCATTTGGCTGTTAAACAT
TTCTCAGTTGAAGGACAACTCGAATTCCGTGCTCTTCTCTTTGTTCCACGTCGTATTCCA
TTTGATCTCTTTGAAGCTAAGAAAAAGAAGAACAACATCAAATTATACGTCAGACGTGTA
TTTATCATGGACAACTGTGAAGATCTTATTCCAGATTATTTGAATTTCATGAAAGGTGTT
GTTGACTCAGAAGATTTGCCATTGAACATTTCTCGTGAAATGTTGCAACAGAACAAGATT
CTTAAAGTCATCCGCAAAAATCTCGTTAAGAAATGCTTAGAATTATTCGAAGAATTAGCA
GAAGATAAGGAAAATTACAAGAAATTCTATAGCCAATTCAGTAAAAACTTGAAATTAGGT
GTTCATGAAGATTCAACAAATCGCGCAAAATTGGCTGATTTACTTCGCTTCCAAACATCT
GCATCAGGTGATGAAAGCTGCTCACTTGGCGATTATGTTGGTCGCATGAAGGAGAATCAA
AAATCTATTTACTTCATTACTGGTGAGAGCAAAGAACAAGTAAGCAATTCAGCATTTGTT
GAACGTGTCAAGAAACGTGGATTTGAAGTTGTTTACATGACTGAACCAATTGATGAATAC
GTCATTCAGCAACTTAAAGAATATCAAGGCAAACAACTTGTTTGTGTAACAAAGGAAGGT
CTTGAATTGCCAGAAGATGAGGAAGAGAAGAAGAAGCGTGAAGAAGATAAGGCCAAATTC
GAAAATCTCTGCAAAGTCATGAAATCAGTTTTAGATAACAAAGTTGAAAAAGTTATTGTA
TCAAATCGTTTGGTAGAATCACCATGCTGCATTGTCACATCTCAATATGGCTGGTCTGCT
AATATGGAGCGTATCATGAAAGCACAAGCTCTACGTGATACAACAACAATGGGTTACATG
GCTGGTAAAAAACATCTTGAAATCAATCCAGACCATCCAATCATCGAGACATTGCGTCAA
AAGGCTGAAGCCGACAAGAACGATAAGGCTGTTAAAGATTTGTGCATTTTACTCTTCGAG
ACTTCATTACTAAGCTCAGGTTTTTCACTTGATGAACCACAAGTTCATGCTGCTAGAATT
TATCGTATGATCAAACTCGGTTTGGGAATTGATGAAGATGAACCAATGGCTACTGAAGAA
CCTGCTGCAGCAGCTTCATCAGATATGCCACCACTTGTAGATGATGCTGAAGATGCTTCA
CATATGGAAGAAGTTGATTAA

>g2254.t22 Gene=g2254 Length=629
MTKSDLVNNLGTIARSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKNNDD
EQYVWESSAGGSFTIAVDEGEPLGRGTKIVLHIKEDQTEYLEESKIKSIVTKHSQFIGYP
IKLLVEKEREKEVSDDEAEPEEDKEKKEGDEPKIEDVGDDEDADKADKEKKKKTVKVKYT
EDEELNKTKPIWTRNPDDITAEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPR
RIPFDLFEAKKKKNNIKLYVRRVFIMDNCEDLIPDYLNFMKGVVDSEDLPLNISREMLQQ
NKILKVIRKNLVKKCLELFEELAEDKENYKKFYSQFSKNLKLGVHEDSTNRAKLADLLRF
QTSASGDESCSLGDYVGRMKENQKSIYFITGESKEQVSNSAFVERVKKRGFEVVYMTEPI
DEYVIQQLKEYQGKQLVCVTKEGLELPEDEEEKKKREEDKAKFENLCKVMKSVLDNKVEK
VIVSNRLVESPCCIVTSQYGWSANMERIMKAQALRDTTTMGYMAGKKHLEINPDHPIIET
LRQKAEADKNDKAVKDLCILLFETSLLSSGFSLDEPQVHAARIYRMIKLGLGIDEDEPMA
TEEPAAAASSDMPPLVDDAEDASHMEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g2254.t22 Gene3D G3DSA:3.30.565.10 - 1 140 3.6E-55
16 g2254.t22 Gene3D G3DSA:3.30.230.80 - 186 354 1.1E-82
13 g2254.t22 Gene3D G3DSA:3.40.50.11260 - 355 441 9.5E-36
14 g2254.t22 Gene3D G3DSA:1.20.120.790 - 442 591 8.2E-68
12 g2254.t22 MobiDBLite mobidb-lite consensus disorder prediction 128 173 -
11 g2254.t22 MobiDBLite mobidb-lite consensus disorder prediction 598 629 -
2 g2254.t22 PANTHER PTHR11528:SF79 HEAT SHOCK PROTEIN HSP 90-BETA-RELATED 1 626 0.0
3 g2254.t22 PANTHER PTHR11528 HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 626 0.0
17 g2254.t22 PIRSF PIRSF002583 HSP90_HTPG 1 629 3.5E-219
4 g2254.t22 PRINTS PR00775 90kDa heat shock protein signature 9 26 1.7E-43
7 g2254.t22 PRINTS PR00775 90kDa heat shock protein signature 34 56 1.7E-43
5 g2254.t22 PRINTS PR00775 90kDa heat shock protein signature 85 102 1.7E-43
6 g2254.t22 PRINTS PR00775 90kDa heat shock protein signature 103 121 1.7E-43
1 g2254.t22 Pfam PF00183 Hsp90 protein 99 604 7.3E-232
9 g2254.t22 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1 129 2.56E-40
8 g2254.t22 SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like 187 442 4.93E-109
10 g2254.t22 SUPERFAMILY SSF110942 HSP90 C-terminal domain 465 587 6.67E-39

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values