General information for g2254.t26
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Heat shock protein 83.
Parent gene
- The parent gene g2254 is located on chr_3: 16308902..16314786 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2254 | g2254.t26 | isoform | g2254.t26 | 16308352 | 16314786 |
| chr_3 | g2254 | g2254.t26 | exon | g2254.t26.exon1 | 16308352 | 16308844 |
| chr_3 | g2254 | g2254.t26 | cds | g2254.t26.CDS1 | 16308385 | 16308844 |
| chr_3 | g2254 | g2254.t26 | exon | g2254.t26.exon2 | 16308908 | 16309733 |
| chr_3 | g2254 | g2254.t26 | cds | g2254.t26.CDS2 | 16308908 | 16309500 |
| chr_3 | g2254 | g2254.t26 | exon | g2254.t26.exon3 | 16314758 | 16314786 |
| chr_3 | g2254 | g2254.t26 | TSS | g2254.t26 | NA | NA |
| chr_3 | g2254 | g2254.t26 | TTS | g2254.t26 | NA | NA |
Sequences
>g2254.t26 Gene=g2254 Length=1348
TGTGAAGATCTTATTCCAGATTATTTGAATTTCATGAAAGGTGTTGTTGACTCAGAAGAT
TTGCCATTGAACATTTCTCGTGAAATGTTGCAACAGAACAAGATTCTTAAAGTCATCCGC
AAAAATCTCGTTAAGAAATGCTTAGAATTATTCGAAGAATTAGCAGAAGATAAGGAAAAT
TACAAGAAATTCTATAGCCAATTCAGTAAAAACTTGAAATTAGGTGTTCATGAAGATTCA
ACAAATCGCGCAAAATTGGCTGATTTACTTCGCTTCCAAACATCTGCATCAGGTGATGAA
AGCTGCTCACTTGGCGATTATGTTGGTCGCATGAAGGAGAATCAAAAATCTATTTACTTC
ATTACTGGTGAGAGCAAAGAACAAGTAAGCAATTCAGCATTTGTTGAACGTGTCAAGAAA
CGTGGATTTGAAGTTGTTTACATGACTGAACCAATTGATGAATACGTCATTCAGCAACTT
AAAGAATATCAAGGCAAACAACTTGTTTGTGTAACAAAGGAAGGTCTTGAATTGCCAGAA
GATGAGGAAGAGAAGAAGAAGCGTGAAGAAGATAAGGCCAAATTCGAAAATCTCTGCAAA
GTCATGAAATCAGTTTTAGATAACAAAGTTGAAAAAGTTATTGTATCAAATCGTTTGGTA
GAATCACCATGCTGCATTGTCACATCTCAATATGGCTGGTCTGCTAATATGGAGCGTATC
ATGAAAGCACAAGCTCTACGTGATACAACAACAATGGGTTACATGGCTGGTAAAAAACAT
CTTGAAATCAATCCAGACCATCCAATCATCGAGACATTGCGTCAAAAGGCTGAAGCCGAC
AAGAACGATAAGGCTGTTAAAGATTTGTGCATTTTACTCTTCGAGACTTCATTACTAAGC
TCAGGTTTTTCACTTGATGAACCACAAGTTCATGCTGCTAGAATTTATCGTATGATCAAA
CTCGGTTTGGGAATTGATGAAGATGAACCAATGGCTACTGAAGAACCTGCTGCAGCAGCT
TCATCAGATATGCCACCACTTGTAGATGATGCTGAAGATGCTTCACATATGGAAGAAGTT
GATTAAATTGTTTTGCACTAATATCACTTAGTCTTTAAACAATTCCAAAAAATTTTTTGA
ATTTGATTTCCCAACTTTAATTTAAAATTTAAATTACGCTTGAAGATACACGACAGTTTC
CTTTTATATTTTTCATCATTCACTCAAACTTAAGTAATTTATAATTATAATAGATGGTAC
AATTTCAAAGATTAATTTTGTTCTCATATTTCATTAGAAGCTAAGTTTTTGAAAAAAAAA
AATAATAAAATAATAATTATAACTTACG
>g2254.t26 Gene=g2254 Length=350
MKGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFEELAEDKENYKKFYSQFSKN
LKLGVHEDSTNRAKLADLLRFQTSASGDESCSLGDYVGRMKENQKSIYFITGESKEQVSN
SAFVERVKKRGFEVVYMTEPIDEYVIQQLKEYQGKQLVCVTKEGLELPEDEEEKKKREED
KAKFENLCKVMKSVLDNKVEKVIVSNRLVESPCCIVTSQYGWSANMERIMKAQALRDTTT
MGYMAGKKHLEINPDHPIIETLRQKAEADKNDKAVKDLCILLFETSLLSSGFSLDEPQVH
AARIYRMIKLGLGIDEDEPMATEEPAAAASSDMPPLVDDAEDASHMEEVD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2254.t26 | Gene3D | G3DSA:3.30.230.80 | - | 1 | 75 | 9.6E-34 |
| 7 | g2254.t26 | Gene3D | G3DSA:3.40.50.11260 | - | 76 | 162 | 3.6E-36 |
| 8 | g2254.t26 | Gene3D | G3DSA:1.20.120.790 | - | 163 | 312 | 2.5E-68 |
| 6 | g2254.t26 | MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 350 | - |
| 2 | g2254.t26 | PANTHER | PTHR11528:SF79 | HEAT SHOCK PROTEIN HSP 90-BETA-RELATED | 2 | 347 | 1.5E-186 |
| 3 | g2254.t26 | PANTHER | PTHR11528 | HEAT SHOCK PROTEIN 90 FAMILY MEMBER | 2 | 347 | 1.5E-186 |
| 1 | g2254.t26 | Pfam | PF00183 | Hsp90 protein | 1 | 325 | 9.1E-153 |
| 4 | g2254.t26 | SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 1 | 163 | 7.21E-63 |
| 5 | g2254.t26 | SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 186 | 308 | 2.22E-39 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0005524 | ATP binding | MF |
| GO:0051082 | unfolded protein binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
