Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Mpv17-like protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2265 g2265.t4 TTS g2265.t4 16344918 16344918
chr_3 g2265 g2265.t4 isoform g2265.t4 16345072 16345885
chr_3 g2265 g2265.t4 exon g2265.t4.exon1 16345072 16345195
chr_3 g2265 g2265.t4 cds g2265.t4.CDS1 16345184 16345195
chr_3 g2265 g2265.t4 exon g2265.t4.exon2 16345341 16345578
chr_3 g2265 g2265.t4 cds g2265.t4.CDS2 16345341 16345578
chr_3 g2265 g2265.t4 exon g2265.t4.exon3 16345641 16345885
chr_3 g2265 g2265.t4 cds g2265.t4.CDS3 16345641 16345885
chr_3 g2265 g2265.t4 TSS g2265.t4 16345921 16345921

Sequences

>g2265.t4 Gene=g2265 Length=607
ATGATAAATTTATTCCGTAGATTTAAAATACTATCTCAAAATGTCATTAAAACTTCATTT
AGTGAAAAACATTTACTTACAACTAATTGTATAATTAGCGTTTCATTGAGTTCAGTTGGC
GACATAATAGAACAAAATTTAGAAATCTATAGAAAAGAAATTAAAGCATGGGATAAAATT
AGAACTCGAAACATGGCTACTTCAGGTTTAACTGTTGGCGTGTTTTGTCATTTTTGGTAT
CAATACTTAGATAGCAAACTTCCCGGACGAACATTTAAAACTGTTATGAGAAAAGTACTT
GTTGATCAAATTATAGCATCGCCCATCGTTATTTCTCTTTTCTTTATTACTCTTGGAGTT
GTGCGAAGAGAATCATTAGAAGAGACAATGAATGAAATAAGACAAAAATTTATTAGACTA
TATAAAGCAGAATGGATTGTTTGGCCTACAGGTATTTCAGTTTTACAATATTTTTTTTAC
GCTAGTATTGTATGACAACACAATTTCATTAGGATATGATGTCTATACATCCTATGTAAT
TAATGAACGAATAGAACATTCTGTAAGTATAATTTCCAAAAATCAATTGAATTCAAACAG
CAGCTGA

>g2265.t4 Gene=g2265 Length=164
MINLFRRFKILSQNVIKTSFSEKHLLTTNCIISVSLSSVGDIIEQNLEIYRKEIKAWDKI
RTRNMATSGLTVGVFCHFWYQYLDSKLPGRTFKTVMRKVLVDQIIASPIVISLFFITLGV
VRRESLEETMNEIRQKFIRLYKAEWIVWPTGISVLQYFFYASIV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g2265.t4 PANTHER PTHR11266:SF8 MPV17-LIKE PROTEIN 2 9 151 1.9E-49
3 g2265.t4 PANTHER PTHR11266 PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 9 151 1.9E-49
1 g2265.t4 Pfam PF04117 Mpv17 / PMP22 family 119 156 1.8E-6
8 g2265.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 64 -
11 g2265.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 65 83 -
10 g2265.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 84 102 -
12 g2265.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 103 122 -
7 g2265.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 123 142 -
13 g2265.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 143 163 -
9 g2265.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 164 164 -
5 g2265.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 65 84 -
6 g2265.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 99 121 -
4 g2265.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 141 163 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed