General information for g2272.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2272 is located on chr_3: 16357126..16361064 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2272 | g2272.t13 | TSS | g2272.t13 | 16356194 | 16356194 |
| chr_3 | g2272 | g2272.t13 | isoform | g2272.t13 | 16357126 | 16359556 |
| chr_3 | g2272 | g2272.t13 | exon | g2272.t13.exon1 | 16357126 | 16358178 |
| chr_3 | g2272 | g2272.t13 | exon | g2272.t13.exon2 | 16358236 | 16358465 |
| chr_3 | g2272 | g2272.t13 | exon | g2272.t13.exon3 | 16358524 | 16358654 |
| chr_3 | g2272 | g2272.t13 | cds | g2272.t13.CDS1 | 16358640 | 16358654 |
| chr_3 | g2272 | g2272.t13 | exon | g2272.t13.exon4 | 16358718 | 16358864 |
| chr_3 | g2272 | g2272.t13 | cds | g2272.t13.CDS2 | 16358718 | 16358864 |
| chr_3 | g2272 | g2272.t13 | exon | g2272.t13.exon5 | 16358924 | 16359306 |
| chr_3 | g2272 | g2272.t13 | cds | g2272.t13.CDS3 | 16358924 | 16359061 |
| chr_3 | g2272 | g2272.t13 | exon | g2272.t13.exon6 | 16359378 | 16359556 |
| chr_3 | g2272 | g2272.t13 | TTS | g2272.t13 | 16359946 | 16359946 |
Sequences
>g2272.t13 Gene=g2272 Length=2123
ATTGTTTAAAAGGACTCTTTATTTCATGTTTTTTGTCTGCATGTTAATTATACAGTTATA
ATTTAAAATTTATTAAATTTTACATTTATCGGATGCATTCACTATTTATATTATCTGATT
ATAAATTAAACTTTTATTGTATTATTCTTTTTTCAAGAGCTTCTAACAACAACGTAATGC
AAGCATAAAGTAAAATTCAATTTTTCAAAAGATACATTGATTTTTATAGCAAGATAAAAA
TCGCTCTCGCTAGTCTTGTAATTTAGTAAATTTCCAATTCAAAAAAATTAAATTAAAAGA
AAAAATCAAAAAAAAAAATTAGAACAATGCGATGAAAACTTTGTTTTTATCATTACAACA
AATGTCTAATAGACAGTGTGAGATATGGGAATTATAAATAATTTCAAGCCCAACATCGCA
ATTAATTATTTATAAAAATCTGCATATAATATTGGCTCTTGTTTCATAAGCGAATCTTCA
TTAAAAATTTGATTTAATAACGACATCTTCATTCTTCGACAAAACGTTTTATCACTTTTG
TTTTGTGTTTATTTTCACGTATTTTGTGATTCTCATAAAAAGACAAAAAGAAGTGAGTCG
AAAAAAAAAAAAAAAATAGTATCATTCTATTGATCTGCCTTCTAATAACTATATATGCAG
GATGAAAGGAAGAGGGAGATTAAAGAGAAAGAAAAATATATACACTTTCACAGGTACGAT
TAATGAAACTTTCAAAAAATAAATGAAGAAAATCAATAGTTATTTTTTATGCATATATGC
ATTTTTGAATTTGGTGTTTAATTAATGAATGTGAAAGATTTTTTTGGTTCAAAGAAATAT
GAATCTCTTAGTACGTGTATAGTTAAAAATGATGCTGACGATGACTCTGTTTCTCTATAT
TTTAGCACTAATTACGCTTCACTTTAAATTGTGATGCGTACGTGTATGTATACGATCTTT
TCTGTCAATTTAATTTTATTCGACATATTCCCACCAGTCTTTATCATATCCTTCATTCAC
ATGATCTAGAAGCACTTTTCTTCGTTTTTCGCATTTACCGATATTTGTCTTGTACTTTCT
GCTTAATGTCCGCCAAGTTTTCGCTTGTTATGTCTCTCTCGAGATATTCACTTAATTTTT
CAGTGGCAGATTCCAAATCTTTTTGATTATCTTCGAAAATCATTGATTGATTATTCTTTT
TCAGATAGTAAGCAAACACATAAGTGCACATGAGAGTTTGTCGGCATTGACATAAAATAT
CTACAGCTTTCTTCAAAAATTGAACCTCAATCCATGACATGTTATGCTGTTGCATTTCTT
CCATCTTTACTTTAACTGAAGCGTAAAGCTTGTGTTCGAATTTCAGTGATTGCATGTGAT
TCATGTAGCGATTGTAGTAATGCAAGTATCTAAACCAATGAAGATCTTAATTTCTCTTGT
GCATCACGAGCAACGCGTGCTTCGTCTTCATCATAACGATTACAATTATACCATGAACTT
CCATGTGGTTCCCAAGATCCCAAGCAAACCCAACAAAATTCGTGTTTACAGTTTTGATTT
TTTTTTATCTCACCATGTGGTTACATCCTCCATCCTTTTCAATAGTCACATTACATTTTG
GACACTCTTTTGTATTGGCAGCAATCCAATTGGACGTTTCAGAATCATCATCACATTTTT
TAATCCACTTCCTAAGTAATCGACATTGCACAGGATCGTGCCATTGCTCACCGCATTCGA
AACAGAACACGTGTCCACATTTGCATTCTACAGGACGAGCTTCGACATACTGAACTTTAA
TAGCATAACTGCAATCAGCTGACGGACACCATCTCAATAAACGATTACACTCAACAAAAC
TATTTGTTATCAATTGCTGATATTTCGTACGGACCCTTGGTTCAATCAATAAACTCATCA
CTGTTGCATCATCCACCAGAATATCACAGCCATGTGCAGCACATGCAATAGATTTGCATA
AACCCTCTTCCATAATCTTTGTCGTAAGATATTCTACCCAACAGGATTTACAAAATCGGT
GACCACACTGAAGGCCCGTCATATTAGTATATTGGTATTTCAGGAAGCAAATCTCACAAT
CTTCCATCATCGAGCAGCGAAAA
>g2272.t13 Gene=g2272 Length=99
MQVSKPMKILISLVHHEQRVLRLHHNDYNYTMNFHVVPKIPSKPNKIRVYSFDFFLSHHV
VTSSILFNSHITFWTLFCIGSNPIGRFRIIITFFNPLPK
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
