General information for g2272.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Putative hydroxypyruvate isomerase.
Parent gene
- The parent gene g2272 is located on chr_3: 16357126..16361064 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2272 | g2272.t2 | TSS | g2272.t2 | 16356096 | 16356096 |
| chr_3 | g2272 | g2272.t2 | isoform | g2272.t2 | 16356224 | 16357126 |
| chr_3 | g2272 | g2272.t2 | exon | g2272.t2.exon1 | 16356224 | 16356576 |
| chr_3 | g2272 | g2272.t2 | exon | g2272.t2.exon2 | 16356643 | 16357126 |
| chr_3 | g2272 | g2272.t2 | cds | g2272.t2.CDS1 | 16356653 | 16357126 |
| chr_3 | g2272 | g2272.t2 | TTS | g2272.t2 | 16357725 | 16357725 |
Sequences
>g2272.t2 Gene=g2272 Length=837
ATGAAATTCAGTGCAAATTTAGGATTTCTTTTTCCTGAAGCGACTACGATAATTGAACAA
TATCAATTATCCAAAGCAGCAGGATTTAAAGCTGTTGAACATCCTTTTCCTCAAAATGTA
GATCATGCAAAGTTACTTGAAATTAAGAATGAAACTGGTTTGAAAGTTGCATTAGTAAAT
ATACAATTAAATGAAGATACTAAAGTAAGAATGTCAATTTTATAAACCTACAATTGTTAT
AAAAATTTATGGTATTTTTAGTTCGGATGTGCTTCATTGCCTGATAAAAGAGAAGTTTTT
AAACAAAATTTTCAAACAACTTTGAATTTTGCAAAAATCTTTGATTGCAAAAAAATTCAT
TTAATGAGCGGAAAAATTGATGGTACAGTTACTCAAGAGAATCGTGACACATTTTTTGCC
AATTTAAAATATGCACTTCCATATCTAGAAAAGGAGGGAATCACTGGAATTATTGAACCA
ATAAATAAATATTCTGTGCCTGGTTATTTTCTTAATGATTTCAAATTTGCAGTTGAAACG
ATCAAGTCACTTGGAAGTAAAAATCTAAAATTGATGGTTGACATTTTTCATTTACAAATG
ATACAAGGAAATGTAATTAATTCTTTGAAAGATTTTCTTCCGTATATGGGGCACATACAA
ATTGCTCAAGCACCTGACAGAAATGAACCTAACTCAAGTGGAGAACTTAACTACAAATTC
ATATTAGCTGAACTTGAAAAACTTGGTTATGATGATTTTGTAGGTCTCGAGTATAAACCA
TTAACAACAACAGTTGAAGGTCTAAAATGGATTAGTGAATATGAACTAAAATTATAA
>g2272.t2 Gene=g2272 Length=157
MSGKIDGTVTQENRDTFFANLKYALPYLEKEGITGIIEPINKYSVPGYFLNDFKFAVETI
KSLGSKNLKLMVDIFHLQMIQGNVINSLKDFLPYMGHIQIAQAPDRNEPNSSGELNYKFI
LAELEKLGYDDFVGLEYKPLTTTVEGLKWISEYELKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2272.t2 | Gene3D | G3DSA:3.20.20.150 | - | 1 | 156 | 0 |
| 2 | g2272.t2 | PANTHER | PTHR43489:SF6 | HYDROXYPYRUVATE ISOMERASE-RELATED | 8 | 154 | 0 |
| 3 | g2272.t2 | PANTHER | PTHR43489 | ISOMERASE | 8 | 154 | 0 |
| 1 | g2272.t2 | Pfam | PF01261 | Xylose isomerase-like TIM barrel | 10 | 152 | 0 |
| 4 | g2272.t2 | SUPERFAMILY | SSF51658 | Xylose isomerase-like | 6 | 153 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
