General information for g2283.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Set1/Ash2 histone methyltransferase complex subunit ASH2.
Parent gene
- The parent gene g2283 is located on chr_3: 16463808..16464482 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2283 | g2283.t6 | TSS | g2283.t6 | 16461843 | 16461843 |
| chr_3 | g2283 | g2283.t6 | isoform | g2283.t6 | 16462405 | 16464482 |
| chr_3 | g2283 | g2283.t6 | exon | g2283.t6.exon1 | 16462405 | 16462895 |
| chr_3 | g2283 | g2283.t6 | cds | g2283.t6.CDS1 | 16462514 | 16462895 |
| chr_3 | g2283 | g2283.t6 | exon | g2283.t6.exon2 | 16463345 | 16463746 |
| chr_3 | g2283 | g2283.t6 | cds | g2283.t6.CDS2 | 16463345 | 16463746 |
| chr_3 | g2283 | g2283.t6 | exon | g2283.t6.exon3 | 16463799 | 16464340 |
| chr_3 | g2283 | g2283.t6 | cds | g2283.t6.CDS3 | 16463799 | 16464340 |
| chr_3 | g2283 | g2283.t6 | exon | g2283.t6.exon4 | 16464393 | 16464482 |
| chr_3 | g2283 | g2283.t6 | cds | g2283.t6.CDS4 | 16464393 | 16464482 |
| chr_3 | g2283 | g2283.t6 | TTS | g2283.t6 | 16464519 | 16464519 |
Sequences
>g2283.t6 Gene=g2283 Length=1525
TGGCAAAGAGAGAAACTTAAGCATAGTTGAAGTCGCCTGTTCCAGTTGTCAAAGATTTTT
TCATGAATCATGTATCGGCTATCAGTTTGGCAAAATCTTGTCATTTTCAATGAACTATAT
CTTTACATGCAAATTTTGTTCTGCAACCGGATTAGAAACTTATCGACGAACAAGTGCAAC
AATTCCTCAAATGTGCATAACAACTATAGCTAATTTGCAGAGAAAAAGCGAAAAAGATGG
ATCTCCTAGATTTTTCTTTAGAAAAGATGAAATAATTTCGTTCATTGATATGTATTGGGA
ATCAATAACTACATTAGCTCGAAAACAAACAAGCGGTTGGCATCTTACAATCTATAAAAC
TCTTCAATCTCATCAAAATCTTTTTCTCAGTCAAGAAAATGGTTCAGAAGTATTATATGG
GCTTGCTGACACTGATCTCACTAACATTAAACCACAGTATGAAAATAATAAAATTGGTCA
AAAAGATGAAGCTAATCAAAATCTGTCTAAAGCTGGACGGCAACCGAAAAGAAAGTTGAC
AGGAAATGAAGCTGTAACCGGTACTGTGGGTAAAAAGGGTCGACCAGCTGCATCAGATCT
TTCAGCAATTATAAATAAATTACCAGCACACGGGTATCCCTTAGAACATCCCTTTAACAA
GGACGGGTATAGATATGTTCTTGCTGAGCCCGACCCGCACGCACCATTTCGACAAGAATA
TGATGAGTCTCCAGATTGGGCTGGAAAACCAATTCCCGGCTGGCTATATCGAGTGCTTAC
TCCTAATGCTGTATTAGTTGCTCTTCATGATCGTGCCCCTCAAATGAAAATTTCAGAGGA
TCGATTGTCTGTAACTGGAGATAAAGGTTATTGCATGAGTAGATGCACACATTTTGTAAC
ACGAGGATCTTGGTATTGGGAAGCAACTATTGAAGAAATGCCAGAAGGATCAGCTACTAG
AATTGGCTTCGGGCAAGAATATGCTAATCTACAGTCACCCCTCGGATATGACAAATTTGG
TTATTCGTGGCGTTCACGCAAAGGAACAAAATTTCATGAGTCACATGGAAAGCATTATAG
CGATGGATATGGAGAAGGTGATACGCTTGGTTTCTTGATTATTCTTCCTGAGCAAGAAGG
AGTAAGATATTTACCTAACACTTATAAGGAAAGACCTCTTGTTAAATTTAAAAGTCATTT
GTACTACGAAGACAAGGATAAAGTTAGTGATACACTGAAAAATTTAAAAATTCATCCTGA
CAGTAAGATTATATTCTTCAAAAATGGAAAATGTCAAGGTATTGCGTTTGAAAATATCTA
TAGTGGAGCATATTATCCATCGATTTCAATTCATAAAAATGCAACTGTAAGCTTAAATTT
TGGAGCAGAGGAGTTTAAATATCCTGAAATTTTGAAAGAATACAACTGTAGTCCAATGCA
TGATCGTGTTGAAGCATTCATTTGTGAACAAACTATGGCTGACATGTTTTTCTTTACTGA
AAATGATGGTAAATTAAGACTTTAA
>g2283.t6 Gene=g2283 Length=471
MNYIFTCKFCSATGLETYRRTSATIPQMCITTIANLQRKSEKDGSPRFFFRKDEIISFID
MYWESITTLARKQTSGWHLTIYKTLQSHQNLFLSQENGSEVLYGLADTDLTNIKPQYENN
KIGQKDEANQNLSKAGRQPKRKLTGNEAVTGTVGKKGRPAASDLSAIINKLPAHGYPLEH
PFNKDGYRYVLAEPDPHAPFRQEYDESPDWAGKPIPGWLYRVLTPNAVLVALHDRAPQMK
ISEDRLSVTGDKGYCMSRCTHFVTRGSWYWEATIEEMPEGSATRIGFGQEYANLQSPLGY
DKFGYSWRSRKGTKFHESHGKHYSDGYGEGDTLGFLIILPEQEGVRYLPNTYKERPLVKF
KSHLYYEDKDKVSDTLKNLKIHPDSKIIFFKNGKCQGIAFENIYSGAYYPSISIHKNATV
SLNFGAEEFKYPEILKEYNCSPMHDRVEAFICEQTMADMFFFTENDGKLRL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2283.t6 | CDD | cd12872 | SPRY_Ash2 | 239 | 429 | 6.32213E-72 |
| 5 | g2283.t6 | Gene3D | G3DSA:1.10.10.2760 | - | 1 | 128 | 1.1E-34 |
| 8 | g2283.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 145 | - |
| 9 | g2283.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 137 | - |
| 3 | g2283.t6 | PANTHER | PTHR10598 | SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2 | 2 | 461 | 1.8E-139 |
| 1 | g2283.t6 | Pfam | PF00622 | SPRY domain | 268 | 337 | 3.9E-5 |
| 2 | g2283.t6 | Pfam | PF00622 | SPRY domain | 384 | 425 | 6.0E-5 |
| 10 | g2283.t6 | ProSiteProfiles | PS50188 | B30.2/SPRY domain profile. | 207 | 429 | 12.61 |
| 7 | g2283.t6 | SMART | SM00449 | SPRY_3 | 265 | 428 | 7.0E-30 |
| 4 | g2283.t6 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 187 | 432 | 1.14E-38 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0048188 | Set1C/COMPASS complex | CC |
| GO:0005515 | protein binding | MF |
| GO:0051568 | histone H3-K4 methylation | BP |
KEGG
Orthology
- This transcript has been annotated with K14964 (Set1/Ash2 histone methyltransferase complex subunit ASH2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
