General information for g2283.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Set1/Ash2 histone methyltransferase complex subunit ASH2.
Parent gene
- The parent gene g2283 is located on chr_3: 16463808..16464482 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2283 | g2283.t9 | TSS | g2283.t9 | 16463030 | 16463030 |
| chr_3 | g2283 | g2283.t9 | isoform | g2283.t9 | 16463808 | 16464482 |
| chr_3 | g2283 | g2283.t9 | exon | g2283.t9.exon1 | 16463808 | 16464340 |
| chr_3 | g2283 | g2283.t9 | cds | g2283.t9.CDS1 | 16463843 | 16464340 |
| chr_3 | g2283 | g2283.t9 | exon | g2283.t9.exon2 | 16464393 | 16464482 |
| chr_3 | g2283 | g2283.t9 | cds | g2283.t9.CDS2 | 16464393 | 16464482 |
| chr_3 | g2283 | g2283.t9 | TTS | g2283.t9 | 16464519 | 16464519 |
Sequences
>g2283.t9 Gene=g2283 Length=623
GAGGATCTTGGTATTGGGAAGCAACTATTGAAGAAATGCCAGAAGGATCAGCTACTAGAA
TTGGCTTCGGGCAAGAATATGCTAATCTACAGTCACCCCTCGGATATGACAAATTTGGTT
ATTCGTGGCGTTCACGCAAAGGAACAAAATTTCATGAGTCACATGGAAAGCATTATAGCG
ATGGATATGGAGAAGGTGATACGCTTGGTTTCTTGATTATTCTTCCTGAGCAAGAAGGAG
TAAGATATTTACCTAACACTTATAAGGAAAGACCTCTTGTTAAATTTAAAAGTCATTTGT
ACTACGAAGACAAGGATAAAGTTAGTGATACACTGAAAAATTTAAAAATTCATCCTGACA
GTAAGATTATATTCTTCAAAAATGGAAAATGTCAAGGTATTGCGTTTGAAAATATCTATA
GTGGAGCATATTATCCATCGATTTCAATTCATAAAAATGCAACTGTAAGCTTAAATTTTG
GAGCAGAGGAGTTTAAATATCCTGAAATTTTGAAAGAATACAACTGTAGTCCAATGCATG
ATCGTGTTGAAGCATTCATTTGTGAACAAACTATGGCTGACATGTTTTTCTTTACTGAAA
ATGATGGTAAATTAAGACTTTAA
>g2283.t9 Gene=g2283 Length=195
MPEGSATRIGFGQEYANLQSPLGYDKFGYSWRSRKGTKFHESHGKHYSDGYGEGDTLGFL
IILPEQEGVRYLPNTYKERPLVKFKSHLYYEDKDKVSDTLKNLKIHPDSKIIFFKNGKCQ
GIAFENIYSGAYYPSISIHKNATVSLNFGAEEFKYPEILKEYNCSPMHDRVEAFICEQTM
ADMFFFTENDGKLRL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2283.t9 | CDD | cd12872 | SPRY_Ash2 | 2 | 153 | 0.000000 |
| 2 | g2283.t9 | PANTHER | PTHR10598 | SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2 | 1 | 185 | 0.000000 |
| 1 | g2283.t9 | Pfam | PF00622 | SPRY domain | 108 | 149 | 0.000016 |
| 5 | g2283.t9 | ProSiteProfiles | PS50188 | B30.2/SPRY domain profile. | 1 | 153 | 9.422000 |
| 4 | g2283.t9 | SMART | SM00449 | SPRY_3 | 1 | 152 | 0.000000 |
| 3 | g2283.t9 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 2 | 156 | 0.000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0048188 | Set1C/COMPASS complex | CC |
| GO:0005515 | protein binding | MF |
| GO:0051568 | histone H3-K4 methylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
