General information for g2285.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Molybdopterin synthase catalytic subunit 1.
Parent gene
- The parent gene g2285 is located on chr_3: 16486009..16486551 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2285 | g2285.t1 | TTS | g2285.t1 | 16485935 | 16485935 |
| chr_3 | g2285 | g2285.t1 | isoform | g2285.t1 | 16486009 | 16486551 |
| chr_3 | g2285 | g2285.t1 | exon | g2285.t1.exon1 | 16486009 | 16486359 |
| chr_3 | g2285 | g2285.t1 | cds | g2285.t1.CDS1 | 16486009 | 16486359 |
| chr_3 | g2285 | g2285.t1 | exon | g2285.t1.exon2 | 16486423 | 16486551 |
| chr_3 | g2285 | g2285.t1 | cds | g2285.t1.CDS2 | 16486423 | 16486551 |
| chr_3 | g2285 | g2285.t1 | TSS | g2285.t1 | 16486913 | 16486913 |
Sequences
>g2285.t1 Gene=g2285 Length=480
ATGAATCATATAAAACTTACTTATGACAAGCTGGATCCAACTGAAATAAGTGAATTAGCA
GTTCATGAAAGTTGTGGAGCTGTTTCGTTATTTATAGGCACAACTCGTGATAACTTTGAC
GGCAAGCAGGTCACTAAACTCGAGTATGAAGCATACGATGATATGGCAATTAAAATAATG
AACAAAATATGTGATGAAATGCGACTTTTTTGGCCAGATATAAAAAATATTTGTATTTAT
CATAGACTCGGTCTTGTTCCTGTTAAAGAAGCTAGTGTTGTTATCGCTTGCAGCTCTCCA
CATAGAAATACAAGTCTTGAAGCTCTTCCTTTTGCACTGAGAAATTTGAAACAATCAGTG
CCTATATTCAAGCGTGAATACTACAAAGATAAAAATGGCTCAAGTGAATGGAAAGAAAAT
CCAGAATGTACCTGGTCAAAAAAATATCAGCAGCAATTGATTAATAATAATTTAAATTGA
>g2285.t1 Gene=g2285 Length=159
MNHIKLTYDKLDPTEISELAVHESCGAVSLFIGTTRDNFDGKQVTKLEYEAYDDMAIKIM
NKICDEMRLFWPDIKNICIYHRLGLVPVKEASVVIACSSPHRNTSLEALPFALRNLKQSV
PIFKREYYKDKNGSSEWKENPECTWSKKYQQQLINNNLN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2285.t1 | CDD | cd00756 | MoaE | 11 | 138 | 0.00000 |
| 6 | g2285.t1 | Gene3D | G3DSA:3.90.1170.40 | Molybdopterin synthase subunit MoaE | 1 | 140 | 0.00000 |
| 4 | g2285.t1 | Hamap | MF_03052 | Molybdopterin synthase catalytic subunit [cnxH]. | 1 | 146 | 49.96443 |
| 2 | g2285.t1 | PANTHER | PTHR23404 | MOLYBDOPTERIN SYNTHASE RELATED | 2 | 149 | 0.00000 |
| 3 | g2285.t1 | PANTHER | PTHR23404:SF2 | MOLYBDOPTERIN SYNTHASE CATALYTIC SUBUNIT | 2 | 149 | 0.00000 |
| 1 | g2285.t1 | Pfam | PF02391 | MoaE protein | 6 | 118 | 0.00000 |
| 5 | g2285.t1 | SUPERFAMILY | SSF54690 | Molybdopterin synthase subunit MoaE | 3 | 146 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | BP |
| GO:0005829 | cytosol | CC |
| GO:0030366 | molybdopterin synthase activity | MF |
| GO:0019008 | molybdopterin synthase complex | CC |
KEGG
Orthology
- This transcript has been annotated with K03635 (molybdopterin synthase catalytic subunit)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
