General information for g2287.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ovarian-specific serine/threonine-protein kinase Lok.
Parent gene
- The parent gene g2287 is located on chr_3: 16491580..16492403 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2287 | g2287.t1 | TSS | g2287.t1 | 16490345 | 16490345 |
| chr_3 | g2287 | g2287.t1 | isoform | g2287.t1 | 16490530 | 16492403 |
| chr_3 | g2287 | g2287.t1 | exon | g2287.t1.exon1 | 16490530 | 16490699 |
| chr_3 | g2287 | g2287.t1 | cds | g2287.t1.CDS1 | 16490530 | 16490699 |
| chr_3 | g2287 | g2287.t1 | exon | g2287.t1.exon2 | 16490759 | 16490937 |
| chr_3 | g2287 | g2287.t1 | cds | g2287.t1.CDS2 | 16490759 | 16490937 |
| chr_3 | g2287 | g2287.t1 | exon | g2287.t1.exon3 | 16490989 | 16491189 |
| chr_3 | g2287 | g2287.t1 | cds | g2287.t1.CDS3 | 16490989 | 16491189 |
| chr_3 | g2287 | g2287.t1 | exon | g2287.t1.exon4 | 16491247 | 16491512 |
| chr_3 | g2287 | g2287.t1 | cds | g2287.t1.CDS4 | 16491247 | 16491512 |
| chr_3 | g2287 | g2287.t1 | exon | g2287.t1.exon5 | 16491580 | 16491748 |
| chr_3 | g2287 | g2287.t1 | cds | g2287.t1.CDS5 | 16491580 | 16491748 |
| chr_3 | g2287 | g2287.t1 | exon | g2287.t1.exon6 | 16491803 | 16492047 |
| chr_3 | g2287 | g2287.t1 | cds | g2287.t1.CDS6 | 16491803 | 16492047 |
| chr_3 | g2287 | g2287.t1 | exon | g2287.t1.exon7 | 16492110 | 16492403 |
| chr_3 | g2287 | g2287.t1 | cds | g2287.t1.CDS7 | 16492110 | 16492403 |
| chr_3 | g2287 | g2287.t1 | TTS | g2287.t1 | 16492615 | 16492615 |
Sequences
>g2287.t1 Gene=g2287 Length=1524
ATGAATTCGCAAGATTTTGCAACCCAGGAATTTTCTAATAGTTCTCAATATTACACCGCT
CAAGTCGATGTTGAGAATACTCAGGTTTTGGCTCAGCATTGGGGAATGTTGAATATAATA
ACTAGTAACAAATGGATAGAATTAATTAAGGATAATGTACATATTGGAAGAACTTTTTCT
CATCCAAATGAAAGTGATCAATATGTGATTTTAGACAAACATGATCTTCCGCAATATAAT
GTTTTTCAACGAGTTTCGAGTCATCATTTCACAATTCAGAAATTAAATAATGATGAAAGT
AATGACTTTCCCTTTGGTGAAAATCAACCTGCTTTTATTATTTCTAAAGGTCAAAACGGT
TTGATTGTTGATGATGAAATGTTGAAAAAAGGCGAGAAAAAGATATTAAAAAATAATAGC
CTGATTAAGTTTCCATTTTACATGCATAAGACTTTTCAATTTAAATACTGGTGGAGTTTA
AATGATCCTTCGATTACTTGCAGTTCAATACTTTTGAAAAATTATTTGGTATGTGGTATT
ATTGGACGAGGTTCTTGTGGTTCTGTTCGATTGGTAATTCCACTAAAGAAAATGCCAGAG
GAAATGAAGTCTAAAGCAGTGGCTTTGAAAACTATAGTTTACAACACATCAACTGTCTAT
AACAGTACAGCTCTTGATACTGTTAAAAACGAGGTTGATATTATGAAGAAACTATCCTAT
CGACACGTTATGAGCTTGTTAAATCATTTCACTGCAGATGACAAGTATCTATATTTGCTT
TTTGATTTGATGGGTGGTGGAGATTTATTGAAACGCATTGTTGATTCTCCAGATAGACGT
CTTTCAGAAACGGACTCGAAATTTTTCTTTTTACAATTAGTTAAAGGCGTAAATTATTTG
CACAGCAATCATGTCACTCATCGAGATATCAAAGCAGAAAATGTTTTTCTTTCCAATCGT
GGCATTTCACCTTTATTAAGAATCGGCGATTTTGGTTTGAGTAAGATCTCTGACGCGATG
AGTACTATTTGTGGTACTCTCTTATATACTGCGCCCGAAGTTTTCGAGTCATCTTTGTAT
TCACAAAAAGTTGATATATGGAGTTTAGGTTGCTTGCTTTATGCAATGCTTTCAGGAAAA
GTCCCGTTCGCAGATCAAGGAAGTGGAAACGAAAAATTGCTCGAAGAAAAAATTAAAAAA
GCCGAATACAGTTTGAAAGGATTTAACCATGTCTCTTTAAGTTCAAAAAATCTCATAAAT
CACATGCTGCAAAAGAACCCTGCACTTCGTTTGGACACCACTCAAATCTTTAAACACGAC
TGGTTAATTGATCAAACGAACTTTGAAAGACTTATGAAAACTTACCAAAATCATGGATTT
CCTGAAAATGAATGTCGTGAAGAATTGTTAATGGTGATGCAGCTTCAAAATTTGGCTATT
ACAGAAAATCGACAAAAACTATATGCTGATAACAATCTTCATTACAGCGATATGCAGGCT
GCAAAACGACAACGACTTCAATAA
>g2287.t1 Gene=g2287 Length=507
MNSQDFATQEFSNSSQYYTAQVDVENTQVLAQHWGMLNIITSNKWIELIKDNVHIGRTFS
HPNESDQYVILDKHDLPQYNVFQRVSSHHFTIQKLNNDESNDFPFGENQPAFIISKGQNG
LIVDDEMLKKGEKKILKNNSLIKFPFYMHKTFQFKYWWSLNDPSITCSSILLKNYLVCGI
IGRGSCGSVRLVIPLKKMPEEMKSKAVALKTIVYNTSTVYNSTALDTVKNEVDIMKKLSY
RHVMSLLNHFTADDKYLYLLFDLMGGGDLLKRIVDSPDRRLSETDSKFFFLQLVKGVNYL
HSNHVTHRDIKAENVFLSNRGISPLLRIGDFGLSKISDAMSTICGTLLYTAPEVFESSLY
SQKVDIWSLGCLLYAMLSGKVPFADQGSGNEKLLEEKIKKAEYSLKGFNHVSLSSKNLIN
HMLQKNPALRLDTTQIFKHDWLIDQTNFERLMKTYQNHGFPENECREELLMVMQLQNLAI
TENRQKLYADNNLHYSDMQAAKRQRLQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2287.t1 | Gene3D | G3DSA:2.60.200.20 | - | 34 | 158 | 4.7E-11 |
| 9 | g2287.t1 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 167 | 506 | 4.2E-74 |
| 3 | g2287.t1 | PANTHER | PTHR44167 | OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED | 115 | 496 | 5.5E-65 |
| 1 | g2287.t1 | Pfam | PF00498 | FHA domain | 54 | 144 | 9.6E-5 |
| 2 | g2287.t1 | Pfam | PF00069 | Protein kinase domain | 179 | 442 | 1.5E-57 |
| 7 | g2287.t1 | ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 305 | 317 | - |
| 10 | g2287.t1 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 175 | 442 | 44.725 |
| 6 | g2287.t1 | SMART | SM00220 | serkin_6 | 175 | 442 | 9.7E-81 |
| 5 | g2287.t1 | SUPERFAMILY | SSF49879 | SMAD/FHA domain | 44 | 154 | 1.86E-10 |
| 4 | g2287.t1 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 166 | 456 | 9.17E-71 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0005515 | protein binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
- This transcript has been annotated with K06641 (serine/threonine-protein kinase CHEK2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
