General information for g230.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Guanine deaminase.
Parent gene
- The parent gene g230 is located on chr_3: 1884600..1885778 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g230 | g230.t2 | TSS | g230.t2 | 1882416 | 1882416 |
| chr_3 | g230 | g230.t2 | isoform | g230.t2 | 1882475 | 1883923 |
| chr_3 | g230 | g230.t2 | exon | g230.t2.exon1 | 1882475 | 1883131 |
| chr_3 | g230 | g230.t2 | cds | g230.t2.CDS1 | 1883030 | 1883131 |
| chr_3 | g230 | g230.t2 | exon | g230.t2.exon2 | 1883193 | 1883450 |
| chr_3 | g230 | g230.t2 | cds | g230.t2.CDS2 | 1883193 | 1883450 |
| chr_3 | g230 | g230.t2 | exon | g230.t2.exon3 | 1883514 | 1883668 |
| chr_3 | g230 | g230.t2 | cds | g230.t2.CDS3 | 1883514 | 1883668 |
| chr_3 | g230 | g230.t2 | exon | g230.t2.exon4 | 1883724 | 1883923 |
| chr_3 | g230 | g230.t2 | cds | g230.t2.CDS4 | 1883724 | 1883922 |
| chr_3 | g230 | g230.t2 | TTS | g230.t2 | 1884665 | 1884665 |
Sequences
>g230.t2 Gene=g230 Length=1270
ATGCTTTCATTTATTCTTAATCGCCAATATTCGGTAAGATCTCTAATAGTAATAAACAAC
ATATCGTATTGTACTTGAATCAAGTGCTGATAAATTCATCTTTATTATTATTGATTCTAA
TGAAATTGGATCTTGTTACTTTAATTGCTAATGTCAGTCATTGTCTAAATTTTAAACCGT
TAAGATGAAAAAAATTTTGATTTTTTCACTTGTTGCTTTTACTTTGTTGGCTATTGCTGG
CATTACAACTTTTGTTTCAATATATTTCCTAAATAATAAAATAGAGGTAACTCATACGTT
ATGAATGTGTTTTTTCATAATTTTAATGAAACATTTAAGCGCTATAAAAGAGAATGAAAC
ATTGAGTGCAAAACAGTGAAACATTAAAAATTCATCAATGAACAAAAACTACCTAATGTA
GTTTTCTTCTTTTTTATTCGCATTCGATTGTCAGCTTCATATCAGTACACTACAAATTTT
ATTTTTTTCTTTGCATATTTTTTCTTTGATAACAAAAATTTTATTTCATCAAAAAATTAG
GAAATCAGAGACGACATGGATCATCATGTGATTTATTTCGGAAATATTTTTCATTCAATT
TCATTTAATGAATCCCAAGAAATTTTGGATGGATTTATAGCTGTGGAAGATGGAAAAATT
ATAGCAATTGGAAATAAAACAGAGTTTGAGGCGTGGAATTATGCAAACAAAGATACTTTT
AAGAAGATAAATTTAACAGATACTCAATTTCTAATTCCTGGTTTTGTCGATTCACATATT
CATGCACCACAAGTACCTAACATTGGTTTAGGTTTAGATAAACCTTTACTTGATTGGCTC
AACACTTATACTTTTCCATTAGAGACACAATACAAGGATAAAAATTTTGCAAAACAAGTT
TATGAGAAAGTTGTTCAACGAACATTGAGCAGTGGAACAACAACTGCTGCATATTTCGCA
ACTATTCATAAAGACTCGTGTAAAATTCTTGCTGATGTTGCTAATGAAAAAGGACAACGT
GCATTTATTGGAAAAGTTGCTATGAATCAATACAGTCCTGACACTTATGTAGAAGAACTT
GAACAATCATTAACTGATAATGAAGAACTCATAAATTATATAAAAGACCTCAAATCAGAT
TTGATAACTCCAATTATCACACCAAGATTTGCAATTTCATGCAGCATGGAAATGATGAAA
AAACTGGCAGAACTTGCTCGAATTCATAATTTGCCAATTCAATCACACATTTCTGAAAAT
GTTGATGAGA
>g230.t2 Gene=g230 Length=238
MDHHVIYFGNIFHSISFNESQEILDGFIAVEDGKIIAIGNKTEFEAWNYANKDTFKKINL
TDTQFLIPGFVDSHIHAPQVPNIGLGLDKPLLDWLNTYTFPLETQYKDKNFAKQVYEKVV
QRTLSSGTTTAAYFATIHKDSCKILADVANEKGQRAFIGKVAMNQYSPDTYVEELEQSLT
DNEELINYIKDLKSDLITPIITPRFAISCSMEMMKKLAELARIHNLPIQSHISENVDE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g230.t2 | Gene3D | G3DSA:2.30.40.10 | Urease | 8 | 68 | 0 |
| 7 | g230.t2 | Gene3D | G3DSA:3.20.20.140 | - | 69 | 238 | 0 |
| 2 | g230.t2 | PANTHER | PTHR11271 | GUANINE DEAMINASE | 3 | 238 | 0 |
| 3 | g230.t2 | PANTHER | PTHR11271:SF47 | GUANINE DEAMINASE-RELATED | 3 | 238 | 0 |
| 1 | g230.t2 | Pfam | PF01979 | Amidohydrolase family | 65 | 235 | 0 |
| 5 | g230.t2 | SUPERFAMILY | SSF51338 | Composite domain of metallo-dependent hydrolases | 6 | 78 | 0 |
| 4 | g230.t2 | SUPERFAMILY | SSF51556 | Metallo-dependent hydrolases | 68 | 238 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
