General information for g2316.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2316 is located on chr_3: 16798814..16799946 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2316 | g2316.t8 | TSS | g2316.t8 | 16798375 | 16798375 |
| chr_3 | g2316 | g2316.t8 | isoform | g2316.t8 | 16798442 | 16799175 |
| chr_3 | g2316 | g2316.t8 | exon | g2316.t8.exon1 | 16798442 | 16798747 |
| chr_3 | g2316 | g2316.t8 | cds | g2316.t8.CDS1 | 16798621 | 16798747 |
| chr_3 | g2316 | g2316.t8 | exon | g2316.t8.exon2 | 16798814 | 16799175 |
| chr_3 | g2316 | g2316.t8 | cds | g2316.t8.CDS2 | 16798814 | 16799175 |
| chr_3 | g2316 | g2316.t8 | TTS | g2316.t8 | NA | NA |
Sequences
>g2316.t8 Gene=g2316 Length=668
ATGGAGAATTTAGCGACAAATATAGGAAAATTATCAGTAGATGAAACGGGTCAAGAAGCA
AGTGAGCAAAATGAGATGAAGTGGGGCATGCAGTTAGTTGAAATATATCGATTAGCACTT
AAATTTTATAAAGGTAAGAAAAAGAAAAAAAAATTGTTGCTGTTTTTTGCTTACATTTTA
TGTTTCCACCCTTAGATAAAGCAGGAAAAGCTGTACATTTAAGTTATGAAGATAATTTAA
AACTAGTAGCATTAACAATGCAAGCTAGTCACGGACCAATAAGTCAACAAAAGTTAGAAC
CATTAGGAGTTTTTGATGTAATTGGACGCGACAGGAGAAATCAATGGACATTACTAGGAG
ACATGAATAAATTACAAGCGATGGAGAGTTTTATTGATTTATTAGACAAAAAATGTGGCA
CTTTTAAGCCATACGTTGAAGCTATAAAAAAAGATCATGAGGAAAAACAGCGACTTGAAG
AAATAGAAAAGGCAAAAAAAGTAGAATTGCTAGAAGCAGAACGAAAACGAGAGGAAGAAC
AGCGATTATTAGAGAATGAAATGCACCGTGAAGAAATTCAACGCAGAAAATTACAAGATG
CATTGAATGAGCAAACTTTCTTTCAGTTCAAAGAATATAGTGAAAAACAGTATCCCGGTA
ATCCTGAT
>g2316.t8 Gene=g2316 Length=163
MFPPLDKAGKAVHLSYEDNLKLVALTMQASHGPISQQKLEPLGVFDVIGRDRRNQWTLLG
DMNKLQAMESFIDLLDKKCGTFKPYVEAIKKDHEEKQRLEEIEKAKKVELLEAERKREEE
QRLLENEMHREEIQRRKLQDALNEQTFFQFKEYSEKQYPGNPD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2316.t8 | Coils | Coil | Coil | 96 | 141 | - |
| 5 | g2316.t8 | Gene3D | G3DSA:1.20.80.10 | - | 4 | 97 | 2.6E-13 |
| 2 | g2316.t8 | PANTHER | PTHR22973:SF12 | LD35087P | 6 | 163 | 1.7E-46 |
| 3 | g2316.t8 | PANTHER | PTHR22973 | LD35087P | 6 | 163 | 1.7E-46 |
| 1 | g2316.t8 | Pfam | PF00887 | Acyl CoA binding protein | 9 | 77 | 2.6E-13 |
| 7 | g2316.t8 | ProSiteProfiles | PS51228 | Acyl-CoA-binding (ACB) domain profile. | 1 | 84 | 21.258 |
| 4 | g2316.t8 | SUPERFAMILY | SSF47027 | Acyl-CoA binding protein | 9 | 82 | 3.01E-14 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000062 | fatty-acyl-CoA binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
