General information for g2325.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2325 is located on chr_3: 16840029..16840680 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2325 | g2325.t3 | TTS | g2325.t3 | 16839229 | 16839229 |
| chr_3 | g2325 | g2325.t3 | isoform | g2325.t3 | 16839256 | 16840351 |
| chr_3 | g2325 | g2325.t3 | exon | g2325.t3.exon1 | 16839256 | 16839976 |
| chr_3 | g2325 | g2325.t3 | cds | g2325.t3.CDS1 | 16839256 | 16839660 |
| chr_3 | g2325 | g2325.t3 | exon | g2325.t3.exon2 | 16840041 | 16840351 |
| chr_3 | g2325 | g2325.t3 | TSS | g2325.t3 | 16840424 | 16840424 |
Sequences
>g2325.t3 Gene=g2325 Length=1032
ATGCCACTGCCTGCAGCTCTATTAGCAAGATTACAAAAACGCGGAATTGTCAATGATGGA
CCAAAGAGTAAGAGTGTCAATTGCATCTCCATTGTTATGGAAATTATTTTATTATTATTC
AATTTGTAATTATTCATAATTTCACTTTCAGTACAAGAGGAAGTTTTTGTTGAAAATCAC
GATAATGATGATGAAATCAATCCTGAAAACTTTGAATATCAAGCGCGGAAGCGTGATGAC
TTTAGATGGACAGATAAATTAAAAAGAAGATTCAAAGAGACAACAAAAGGATTGAGTGGT
TGCCCAAATAAATGGAATATTCATCATGTTTGCACAGTATATTGCTCTGAAAGATGGGGT
GAAGGAAATTCGAAACCATCAAAAGCTTACAAAGAAAGATTCCAACGTTTGCTTGATCGT
TATCCTTTGCCTAAGAAAGGCAATTGGGCTTATATTTATGATCCAGGATGTCAAGCTTAT
TATTTTTGGAATAAAGACGATAATACAGTTTCGTGGCTTCCACCAAAACATCCTAAAGCT
CAAATAGGAAAATCTGCAGCAACACTTAGAAGTGAAAAAGATCGTCCTGATTTAGAATCT
ACTGATGAACCTGAAGCGAATGTTCAGATGATTCCACCTACATCTAGTAATTCTCCACCA
CCATCAGAAGAGCGATATCAGAGACCAGTGGTCACAAAGAAAACAAAATCTCGAGATTTA
GAGAAAATTTTGAGAACAAAGAAAGGACGTAAGCAATTCTATGAGAACTCAGACATTATT
GATCCTTGTGATCCCGCTTCATATGGAGATTGTGGCAGAGGCAAATGGAGTTCTGGCTTA
AATCAAGAAGAAAAAGGCGCAGCAGATTCTACTGCAAGTGGTCCACTATTTCAACAGCGA
CCATATCCATCGCCTGGTGATGTGCTTCGTGCTCAAGGAAAGCGAAAGGAATTGTCAGAT
AATTCTGATCAAGAAGATGATACTCACGATTCAGAAAAGAAGCAGCGACGATACAGTGAA
GAAATGGAATGA
>g2325.t3 Gene=g2325 Length=134
MIPPTSSNSPPPSEERYQRPVVTKKTKSRDLEKILRTKKGRKQFYENSDIIDPCDPASYG
DCGRGKWSSGLNQEEKGAADSTASGPLFQQRPYPSPGDVLRAQGKRKELSDNSDQEDDTH
DSEKKQRRYSEEME
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2325.t3 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 19 | 114 | 3.8E-21 |
| 5 | g2325.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - |
| 7 | g2325.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 35 | - |
| 3 | g2325.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 134 | - |
| 4 | g2325.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 89 | - |
| 6 | g2325.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 134 | - |
| 1 | g2325.t3 | PANTHER | PTHR21737 | POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 | 32 | 109 | 1.6E-20 |
| 2 | g2325.t3 | PANTHER | PTHR21737:SF3 | POLYGLUTAMINE-BINDING PROTEIN 1 | 32 | 109 | 1.6E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K12865 (polyglutamine-binding protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
