Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2332 g2332.t6 TTS g2332.t6 16878904 16878904
chr_3 g2332 g2332.t6 isoform g2332.t6 16879478 16880198
chr_3 g2332 g2332.t6 exon g2332.t6.exon1 16879478 16880198
chr_3 g2332 g2332.t6 cds g2332.t6.CDS1 16879479 16880000
chr_3 g2332 g2332.t6 TSS g2332.t6 NA NA

Sequences

>g2332.t6 Gene=g2332 Length=721
GGTGATTATTACGACATTCGTCTCAACAAACCTATCGTTCAAAATAGATTAACAAATGTC
ATTAAAAAATTAACAGAAATTGGAGTTAAAGGATTTCGATTTGTTAACGCTAAATATATT
GTTACTGAATCGGAATTTATAGATGAAATTCCTAATTCAAAAGCACATGGTTTAAACAAA
GAAGATTTTGGTTTCTATATGCACAGTCAACGAGAATTTTCACAAGAACTCAAAGATATT
ATTCTTTATTATAATAGTTTTGTATTAAATGTTACAAATGATGAAGGATTTTTAGCTATT
CGAGATGATATTTCTAATCATATTGAAAGTTTTGTTGACAATAAAAGAATCAATGCATTT
GAACTGCCACGATTTGGATTTATAACCAAATTTTTCCATGATGCAAAAACCAAAAATGTT
GCCAAAAGTCTCTTTGACGTTTTTGAAAATTTAAGCGGTAACGTTGATTTGTCATTAGTA
TGGACTCAAATTCAATATACAAAGAATACTTATAATAATTTCGAAGAATCTGCATACAAG
CTATTCATCAGTTTCTTGCGTGGCGTTCAAATTGCACCTTTTGATGATCTCGTTTACATA
GATGATGATAACGGTGAAACATATAATAAGCTAAAAACTGAACGTGCTTCACGTGCTACT
GTTTTTGAACATGGAAATTTTAATTTCTATTTAAGCAACAATACTGATGCATTCGCATAT
T

>g2332.t6 Gene=g2332 Length=174
MHSQREFSQELKDIILYYNSFVLNVTNDEGFLAIRDDISNHIESFVDNKRINAFELPRFG
FITKFFHDAKTKNVAKSLFDVFENLSGNVDLSLVWTQIQYTKNTYNNFEESAYKLFISFL
RGVQIAPFDDLVYIDDDNGETYNKLKTERASRATVFEHGNFNFYLSNNTDAFAY

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed