General information for g2336.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Organic cation transporter-like protein.
Parent gene
- The parent gene g2336 is located on chr_3: 16895470..16896052 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2336 | g2336.t11 | TTS | g2336.t11 | 16892557 | 16892557 |
| chr_3 | g2336 | g2336.t11 | isoform | g2336.t11 | 16892882 | 16893442 |
| chr_3 | g2336 | g2336.t11 | exon | g2336.t11.exon1 | 16892882 | 16893442 |
| chr_3 | g2336 | g2336.t11 | cds | g2336.t11.CDS1 | 16892882 | 16893253 |
| chr_3 | g2336 | g2336.t11 | TSS | g2336.t11 | NA | NA |
Sequences
>g2336.t11 Gene=g2336 Length=561
ACGTTTTATTACTTTTGACTTTGGTTTGTAATTAATTTTATTATATTAATTTTGTTTAAT
CAAAAAGTATTTTAGAATCGATTTGGACGTAAAAAAGTTTTAGCCGGTAATTTAACGTTT
GCTGGAATTGTATTACTATTATCACTCGCTGTTCCACAAGATATAACATGGCTAGTGATT
ACATTGACAATGCTTGGAAAGATGAGCATTACTGCATCATACGGAACAATTTATTTATTT
TCTGTAGAACAGTTTCCAACAGTCATACGAAATGTTGCATTAGGCTGTTGTTCAATGTCA
GCAAGAGTCGGTTCAACAATATCGCCATATCTCTTATACCTTGCAAACACATGGCAGCCT
TTACCAATTCTGATCTTTGGTCTAACTGCTTTCATCGGCGGATTTTTCTCCTTATTTTTG
CCAGAAACTTATAATAAAGACTTGCCCGATACATTGGCTGATGCTGAAATTAATGACTTA
AAAATGATCGAAGTACCTATTGGTGAAGAACTTAAAGAATTAAACAAAAATGACAATAAA
AATCCAACATCTGACGCTTAA
>g2336.t11 Gene=g2336 Length=123
MLGKMSITASYGTIYLFSVEQFPTVIRNVALGCCSMSARVGSTISPYLLYLANTWQPLPI
LIFGLTAFIGGFFSLFLPETYNKDLPDTLADAEINDLKMIEVPIGEELKELNKNDNKNPT
SDA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2336.t11 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 1 | 98 | 2.2E-17 |
| 1 | g2336.t11 | PANTHER | PTHR24064 | SOLUTE CARRIER FAMILY 22 MEMBER | 1 | 91 | 1.6E-25 |
| 2 | g2336.t11 | PANTHER | PTHR24064:SF453 | SOLUTE CARRIER FAMILY 22 MEMBER 4 | 1 | 91 | 1.6E-25 |
| 7 | g2336.t11 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 57 | - |
| 8 | g2336.t11 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 58 | 77 | - |
| 6 | g2336.t11 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 78 | 123 | - |
| 4 | g2336.t11 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 6 | 87 | 1.03E-8 |
| 3 | g2336.t11 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 55 | 77 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
