General information for g2351.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ADP-ribosylation factor-like protein 8.
Parent gene
- The parent gene g2351 is located on chr_3: 17108476..17109834 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2351 | g2351.t11 | isoform | g2351.t11 | 17107669 | 17108893 |
| chr_3 | g2351 | g2351.t11 | exon | g2351.t11.exon1 | 17107669 | 17108599 |
| chr_3 | g2351 | g2351.t11 | TTS | g2351.t11 | 17107674 | 17107674 |
| chr_3 | g2351 | g2351.t11 | cds | g2351.t11.CDS1 | 17108476 | 17108599 |
| chr_3 | g2351 | g2351.t11 | exon | g2351.t11.exon2 | 17108657 | 17108818 |
| chr_3 | g2351 | g2351.t11 | cds | g2351.t11.CDS2 | 17108657 | 17108814 |
| chr_3 | g2351 | g2351.t11 | exon | g2351.t11.exon3 | 17108879 | 17108893 |
| chr_3 | g2351 | g2351.t11 | TSS | g2351.t11 | 17109915 | 17109915 |
Sequences
>g2351.t11 Gene=g2351 Length=1108
TGTAAATGCAATTGTTTATATGGTTGATGCTGCAGACTTAGATAAAATGGAAGCTTCAAG
AAACGAGCTTCATTCGTTACTTGATAAGCCGCAATTAGCTGGTATTCCAGTATTAGTACT
CGGAAACAAACGAGATTTACCAGGTGCTCTTGAAGAGACAGGTCTAATTGAACGAATGAA
TTTGTCAGCCATTCAAGATAGAGAGATTTGCTGTTATAGCATTTCATGCAAAGAAAAAGA
TAACATCGATATAACACTTCAGTGGTTAATTGCCCATTCAAAAAGTCAAGCCAATCGTTA
AGCAAAAAATAATAGAATAATTTTAATCGCTTCTTGATACTGTTTTCTTCAAATAAGTCA
AATATAATAATTTTATGTATTTTTTTTTTGTTGTCTGTCCAACCGTTTTATCCGTATAAT
TCAGTCACTTTGTGTATCGCAAACCTTAATCTAATAAATACCATTCATTGTTTTCTACAA
ATAAATATAGTGACGCATAAAAAAATATTTCATATCAAAATTAAAATTCTGGAAATCTCA
ACGCAACATTAAAAATAACAAATAATCACACAATATTCAAATTATTAACATAATCCTTTG
ATTCACATGAACTAGATCTTTTTTTTTCTAAATACTTTACTAATATACTTATTTTTTTAT
TATCATACCTACATCAATGTTAAAATTCAGTTATTTTTATATTTTGTGATAATTTATTCG
AAATCTTTAAAATGATTAAAGTCTTATGCTCATCATGAGTATTGAGACAATGTATATGCA
AAAAAAATATTCGTAAAGGTTCATAAAATTTTTATTCTTATTATAAAATCGACTACCTAT
GTTAAGGAATTTCATGAGAAACAATATTAACAAATAATTTTTAATTTTATTAATCTAACT
ATTATAAATATATTATATAGCAGTTGTTCTTGACGTTTGATTCACATGATGATGATGAAT
AAAAAAAAGAAGACTACAGATAGTTAGTTAAAGCTTCTTTTGTATTAAGGGAAAATGATG
AAACAAATAAGAAAATATGATAATATTGAAAATCTAGAGAAACAAAAAAAGAGCTGAATA
AAAAGTTTGCTTTCTGATTAAAGAAAAA
>g2351.t11 Gene=g2351 Length=93
MVDAADLDKMEASRNELHSLLDKPQLAGIPVLVLGNKRDLPGALEETGLIERMNLSAIQD
REICCYSISCKEKDNIDITLQWLIAHSKSQANR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2351.t11 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 88 | 0 |
| 2 | g2351.t11 | PANTHER | PTHR45732:SF16 | - | 1 | 90 | 0 |
| 3 | g2351.t11 | PANTHER | PTHR45732 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 | 1 | 90 | 0 |
| 1 | g2351.t11 | Pfam | PF00025 | ADP-ribosylation factor family | 1 | 85 | 0 |
| 4 | g2351.t11 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 87 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
