Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP-ribosylation factor-like protein 8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2351 g2351.t16 TTS g2351.t16 17107674 17107674
chr_3 g2351 g2351.t16 isoform g2351.t16 17107940 17109834
chr_3 g2351 g2351.t16 exon g2351.t16.exon1 17107940 17108599
chr_3 g2351 g2351.t16 cds g2351.t16.CDS1 17108476 17108599
chr_3 g2351 g2351.t16 exon g2351.t16.exon2 17108657 17108818
chr_3 g2351 g2351.t16 cds g2351.t16.CDS2 17108657 17108818
chr_3 g2351 g2351.t16 exon g2351.t16.exon3 17108879 17109033
chr_3 g2351 g2351.t16 cds g2351.t16.CDS3 17108879 17109033
chr_3 g2351 g2351.t16 exon g2351.t16.exon4 17109722 17109834
chr_3 g2351 g2351.t16 cds g2351.t16.CDS4 17109722 17109730
chr_3 g2351 g2351.t16 TSS g2351.t16 17109915 17109915

Sequences

>g2351.t16 Gene=g2351 Length=1090
ATGTTTGCTATAATAAATAAGATTCTGGATTGGTTCAAATCTCTCTTTTGGAAAGAAGGT
AGTTACCTAATTAGAATTTAAGCATTGAAACGATGAAATATTAAATGAAATTCTCTGGTA
ACTTTAGCGAAGATATGATTCCTACTGTTGGCTTTAACATGAGAAAAGTTACAAAAGGAA
ATGTTACAATCAAAGTATGGGATATTGGTGGACAGCCGAGATTTCGATCTATGTGGGAAC
GTTATTGTAGGGGTGTAAATGCAATTGTTTATATGGTTGATGCTGCAGACTTAGATAAAA
TGGAAGCTTCAAGAAACGAGCTTCATTCGTTACTTGATAAGCCGCAATTAGCTGGTATTC
CAGTATTAGTACTCGGAAACAAACGAGATTTACCAGGTGCTCTTGAAGAGACAGGTCTAA
TTGAACGAATGAATTTGTCAGCCATTCAAGATAGAGAGATTTGCTGTTATAGCATTTCAT
GCAAAGAAAAAGATAACATCGATATAACACTTCAGTGGTTAATTGCCCATTCAAAAAGTC
AAGCCAATCGTTAAGCAAAAAATAATAGAATAATTTTAATCGCTTCTTGATACTGTTTTC
TTCAAATAAGTCAAATATAATAATTTTATGTATTTTTTTTTTGTTGTCTGTCCAACCGTT
TTATCCGTATAATTCAGTCACTTTGTGTATCGCAAACCTTAATCTAATAAATACCATTCA
TTGTTTTCTACAAATAAATATAGTGACGCATAAAAAAATATTTCATATCAAAATTAAAAT
TCTGGAAATCTCAACGCAACATTAAAAATAACAAATAATCACACAATATTCAAATTATTA
ACATAATCCTTTGATTCACATGAACTAGATCTTTTTTTTTCTAAATACTTTACTAATATA
CTTATTTTTTTATTATCATACCTACATCAATGTTAAAATTCAGTTATTTTTATATTTTGT
GATAATTTATTCGAAATCTTTAAAATGATTAAAGTCTTATGCTCATCATGAGTATTGAGA
CAATGTATATGCAAAAAAAATATTCGTAAAGGTTCATAAAATTTTTATTCTTATTATAAA
ATCGACTACC

>g2351.t16 Gene=g2351 Length=149
MKFSGNFSEDMIPTVGFNMRKVTKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDA
ADLDKMEASRNELHSLLDKPQLAGIPVLVLGNKRDLPGALEETGLIERMNLSAIQDREIC
CYSISCKEKDNIDITLQWLIAHSKSQANR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g2351.t16 CDD cd04159 Arl10_like 4 142 0.00000
8 g2351.t16 Gene3D G3DSA:3.40.50.300 - 1 149 0.00000
2 g2351.t16 PANTHER PTHR45732:SF16 - 4 146 0.00000
3 g2351.t16 PANTHER PTHR45732 ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 4 146 0.00000
6 g2351.t16 PRINTS PR00328 GTP-binding SAR1 protein signature 13 37 0.00000
5 g2351.t16 PRINTS PR00328 GTP-binding SAR1 protein signature 40 65 0.00000
4 g2351.t16 PRINTS PR00328 GTP-binding SAR1 protein signature 85 106 0.00000
1 g2351.t16 Pfam PF00025 ADP-ribosylation factor family 6 141 0.00000
14 g2351.t16 ProSiteProfiles PS51417 small GTPase Arf family profile. 1 143 17.87200
10 g2351.t16 SMART SM00177 arf_sub_2 1 147 0.00000
11 g2351.t16 SMART SM00175 rab_sub_5 1 146 0.00017
12 g2351.t16 SMART SM00178 sar_sub_1 1 143 0.00370
7 g2351.t16 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 5 143 0.00000
13 g2351.t16 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 110 0.00000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF
GO:0015031 protein transport BP
GO:0003924 GTPase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values