General information for g2360.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Low-density lipoprotein receptor-related protein 6.
Parent gene
- The parent gene g2360 is located on chr_3: 17187024..17188976 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2360 | g2360.t1 | TSS | g2360.t1 | 17179776 | 17179776 |
| chr_3 | g2360 | g2360.t1 | isoform | g2360.t1 | 17180183 | 17188469 |
| chr_3 | g2360 | g2360.t1 | exon | g2360.t1.exon1 | 17180183 | 17180261 |
| chr_3 | g2360 | g2360.t1 | cds | g2360.t1.CDS1 | 17180183 | 17180261 |
| chr_3 | g2360 | g2360.t1 | exon | g2360.t1.exon2 | 17183243 | 17183892 |
| chr_3 | g2360 | g2360.t1 | cds | g2360.t1.CDS2 | 17183243 | 17183892 |
| chr_3 | g2360 | g2360.t1 | exon | g2360.t1.exon3 | 17184005 | 17186206 |
| chr_3 | g2360 | g2360.t1 | cds | g2360.t1.CDS3 | 17184005 | 17186206 |
| chr_3 | g2360 | g2360.t1 | exon | g2360.t1.exon4 | 17186265 | 17186471 |
| chr_3 | g2360 | g2360.t1 | cds | g2360.t1.CDS4 | 17186265 | 17186471 |
| chr_3 | g2360 | g2360.t1 | exon | g2360.t1.exon5 | 17186528 | 17186694 |
| chr_3 | g2360 | g2360.t1 | cds | g2360.t1.CDS5 | 17186528 | 17186694 |
| chr_3 | g2360 | g2360.t1 | exon | g2360.t1.exon6 | 17186755 | 17187024 |
| chr_3 | g2360 | g2360.t1 | cds | g2360.t1.CDS6 | 17186755 | 17187024 |
| chr_3 | g2360 | g2360.t1 | exon | g2360.t1.exon7 | 17187082 | 17187509 |
| chr_3 | g2360 | g2360.t1 | cds | g2360.t1.CDS7 | 17187082 | 17187509 |
| chr_3 | g2360 | g2360.t1 | exon | g2360.t1.exon8 | 17187568 | 17187640 |
| chr_3 | g2360 | g2360.t1 | cds | g2360.t1.CDS8 | 17187568 | 17187640 |
| chr_3 | g2360 | g2360.t1 | exon | g2360.t1.exon9 | 17187698 | 17188469 |
| chr_3 | g2360 | g2360.t1 | cds | g2360.t1.CDS9 | 17187698 | 17188469 |
| chr_3 | g2360 | g2360.t1 | TTS | g2360.t1 | NA | NA |
Sequences
>g2360.t1 Gene=g2360 Length=4848
ATGAAAAAACTCTGCAATTCATACAATTCGTTAGTGATTTTACTGTTCCTTCTCACCATA
ATCAATATCAATGGAGCAAATGCTGGGCAACCGATAACATTACGAAACTCACCTACTTCA
CATGCATCCTCAATATCAACGACGTCGTCGTCATCATCAACCCTTCTCATATTCACAACA
TATCACGATATTCGCATAGCGAATTTGTCACGTAATCATGTCACCAGCATTACAACAATT
ACAAAGGACTTGGTTGAAGGAGCGGGTCTCGACTTTTATTATGACAAGCAATTGGTATGT
TGGACGGATCAGGGAATGGAAGCAATTCAATGTAAAAAAATGAATGCATCATTTTATGGT
GATCATCAGCCCGTTGGACCGGTGGGAATTGACGAGTTGACAGAAAACATTGACAAGATT
AGCATAATTACCAAACGAATTGAGAAACCTGAGGGAATCGCAATTGATTGGTATACAGAC
AAAATTTACTGGGTTGATGGTGAACTTAATAATATTGAAGTGACAACATTAAATGGAAAA
TATCGCAAGTTGCTTTTCTGGACAGATCTCGATCAGCCAAGGGCAATTTCACTTGTGCCC
GCGCAGAAGCTAATGATATGGTGTGACTGGGGAGAAATTCCTCGAATTGAACGAGCCTCG
ATGGACGGGGATAAGTATAGTCGCATGATTCTCGTTAGCGATCGTATTTATTGGCCAAAT
GGACTCACGGTTGATATTGAAAACAACTTAATCTACTGGGTTGATGGGAAACTTCAATTT
CTTGATGTAATGAATCTTGACGGCAGTGGACGACGTACGATATTGAAAGACTTGAATTAT
CCATATAGTGTCACGTACATAAATCGAATGCTCTTTTGGAGCGATTGGAATGTGGGAAAA
ATAAATTCCTATGATCTTTCAACGGGTGAGCAGAAGGAGGTCATTGATGACTCTGAAGTT
CCAATCACAGTTCATGCATGGCATCAAGTACTTCAACCATCAGCGCCTAATCCATGCAAA
ATCAACAATGGAAATTGCTCACATTTGTGTCTGCTGTCATCAACAAATATAAAAGGCTTC
TCATGTGCATGTCCGACAGGTGTAAAATTGCTTACAGATACACTGTGTGCAGACGGACCT
CAAAATGTCATTTTTCTTGTTCAACGTACGCAAATAAGCAGAATAAGCTTAGACTCACCT
GACTATACGAGTTTTCCACTCTCGCTTGGCAGAGTTCGTTCAGCAATTTCAATTGATTAT
GATCCAGTTGACGATTTTATTTACTGGTCAGATGAAGATCAACGAGTAATTAAGAAATCA
CGACAAGACGGGACACTTATTACTGATGTAATTAATACAGAAATCAAACACCCTGATGGA
CTCGCAATTGATTGGATTGCGAGAAACTTGCTTTGGACAGATTCCGGATCTGATCGCATT
GAAGTTTCTCGATTGAATGGACTTTATAGAAGAGTTTTAATCAATGACAATCTCGATGAG
CCTCGAGGCATTGCTGTTGCACCAACTTTAGGCTGGATGTTTTGGGGCGATTGGGGAAAA
AAGCCAAAAATTGAACGAGCTTCACTTGATGGTACTGAGAGAGTCGTTTTAATTTCTGAT
GATTTAGGCTGGCCAAATGGAATCACACTTGATGTTGATATGAAAAAACTTTATTGGTGT
GATGCAAAGTTAGATAAAATTGAAGTCACAAATATGGATGGTTCAGAACGTCGCATTATT
TTAAATGAAAATCTTCCACACATTTTCGGCTTGAGTCTCTTTGGCAATCATATTTATTGG
ACTGATTGGCAGCGAAGGACAGTAGAAAGAGCAAATAAGGTTACGGGTAATGAGAGAATC
ATAATAGCAGAACAATTTCCTGATTTAATGGGACTGAAAGTTACAAAGTTGCAAGAGATC
AAAGGAACAAATCCATGCATGAATAAAAATGGTGGCTGTACACATTTATGCCTTAATCGA
CCAAATGACTACGTGTGTCGTTGTCAAATTGATTATGAACTTGGAAGAGATCGAAAAAGT
TGTAGTCTTCCATCAGCATTTTTACTTTTTGCTAAAGGCAAAACAATTGGCCGATTAAGC
ATAGAATATAATAATAATGATGACCAAAATGATCACCTTATTCCATTTAAGGATATTCGC
GATGCTTCACATTTTGATGTCGATATTAATGATAGACGCATTTATTGGGTTGATCAGCAT
TCAAAATGCATCTCAAGAGCATACATAAATGGCTCAGAAGTGCAACGTGTCGTTGATCTC
GGCTTAATTACACCCGAGGCAGTTGCTGTCGATTGGATTGGTCACAATATTTTCTGGGCT
GATTCAGATGCAAAAAGAATTGAAGTAGCTCGATTAGATGGCACAAGTAGAAGAATACTG
GTATGGAGAGGAATTGAAGAACCAAAAAATTTAATAATTGAGCCTAAAAGAGGTTTCATG
TATTGGACAGAACGTCCTTCAGATGTAATTAAGCGTGCAGCTATGGATGGCTCTGATATT
CAAGTGATTGTTTCAAATGCTAATAATCCAACCAGTTTGACAATCGACTCAGATTCAAGG
AGAATTTACTGGTCAACTGAGCTTGAACCAACTGGCATCGAGTCAGCTGATTGGGATGGA
AAAAGAAGAACAATTCTAAAACTTGATGGTGGTGATGCAGAAATTTCATTTATGCCGCGA
TCACTTACACTTCATCAAGACTACATTTACTGGGTTGATTGGAATAGCGGTGATGTTGAA
CGTGCAAATAAAATCACTGGAAATAACCGAACAATTGTTTATAAGAATCTTGGTGAGGCT
TCAAGTCTCATGTTATTTCATAATTCAAAACAAACTGGTACAAATCCGTGTCAAAAAAAC
AATGGAGGATGCAGTCATTTATGTTTAGTATTACCTGGTGGTCGTAAGAAGTATACATGT
GCATGTCCAACACATCATACATTGGCAAATGATGAAATGAATTGTATTCCACCGAGAAGT
TATTTGATCTATAGTATGAAAAGTTCTTTTGGAAGAATGCTGCCAAACTCAAGTGATTCA
CCTGATGCTTCTTTGACTGTTTCTACAAAATTTATTAGAGCTGTGGAATATGATCCTATA
CAACATTATGTTTATTGGATTGATGGAAGAGGAACAGTAAAAAAATCACTCGAAAATGCA
ACAAAACCAACACTTTTAATAGGAGGTTCAGGATCACATTCTCAACCATTTGACTTAGCA
ATTGATATTATTGGTAGACTTTTATTCTGGACATGCTCTCATGCAAACACAATCAATATC
ACAAATCTTGATGGCTATGCAATTGGAACAGTAGATACTGGAAATTCTGAGAAACCGAGA
AGTCTTGCTGTGCACCCAACAAAACGTTTATTGTTTTGGACAGATGTTGGAAGTCGTCAG
GCAGTAATTCGAGCAAAAATGGATGGAAGTAATAGCATGGTGTTAGCTATTCAATTGGAA
GGCGTCACAAGTCTTGCTGTTGATCCAATCTCAAACATGTTGTTTTTCGCTCATGGAAGA
AAAATTGAATTTATGGACATAAATGGAAAGAATCGAAAAATTTTAACAAGCAGCAACATA
AATCAAGTTCATTCAATAGCAGCATTTCCAAATGTCATCTACTGGTTAGATGAGAAATAT
GGTTTAGAAAAAGCCACACTTGATGGTGATTTTATAAAATTGGAGAAAAAATATAATCAT
CTCACAGATATTGTTGCCGTATGGCATCCTGAGTCGAAGATAATCAAAAATCATTTGTGT
ATGTCATCAAGAAATAAATGTACACACATTTGCATAGCAACACTTAATAACAGTAAAGCA
GATGAATTTTGTTCATGTCCAGCTGGATTGATGTTACTAAAAGATAAAAAGAGTTGTACA
GCACAACCAGTTTGTGGTCCAGATCACTTTACATGTGCTTCACCATACACAAGTAATGGT
TATTCAGGAGATAATAAAGATTGTATTCCTTATGCATGGAGATGCGATGGACAAAATGAT
TGTCCTGATAAATCTGATGAAATGGATTGCCCATCATGCAGTTCTGATCAATTTCGTTGT
AATACAGGAGAATGCATTGATAAAAGTTTTCTTTGTGATGGAACTACTCATTGTGCAGAT
GGTGGTGATGAAGCAATGTGCTGCAATCCAGGAGATTTTCAATGTGCAAGCAACCATGTT
TGCATACCAAACACATTTATGTGTGACGGTTGGGAACATTGTGCTGATGGCTCAGATGAG
ATTAATGAAATTTGTAGCGTAGTTACAAGAAAACCTCCACCAACTGACAAAAAATTGTTT
GTAGTAATTCTCATAGTTTTGGTGCTTATAATTTTCTTTGTCGTATATATTTTGCAAATA
TGTCGAAATAAATTTGCTGATACAATTCGTGAGCCAAAGGAAGATCAAGCATCAGCTCCG
CTATCTCCAGGAGCATTAAACAGTTTGCGAATGACGAAAATTTCATCAGTAGCGGATGCT
GTGAGATTAACGACAATGAGTCGAAACAGCATGAACAGCTACGATCGAAATAACATTACT
GGAGCGAGCAGTTCAACTACAAACGGAAGTCTAATTGGATATCCGAGTAATCCACCGCCA
TCGCCAGCCACGACCTCAACACTGCACAACAGTTACCCGTATAAACATTATAAAGTGATT
AATCAAGCTCCACCCACGACACCTTGCAGTACAGATGTTTGTGAATCAGATTCAAATTAT
ACACCAATATCAGTCAAAAGTTCAAAGCGATCAGCAGATAGTTGCTATGGTGTAAACATC
TATATGGGCAGTAGTTTAAATGGAAGTAGCAACAATAAATCATACTAA
>g2360.t1 Gene=g2360 Length=1615
MKKLCNSYNSLVILLFLLTIININGANAGQPITLRNSPTSHASSISTTSSSSSTLLIFTT
YHDIRIANLSRNHVTSITTITKDLVEGAGLDFYYDKQLVCWTDQGMEAIQCKKMNASFYG
DHQPVGPVGIDELTENIDKISIITKRIEKPEGIAIDWYTDKIYWVDGELNNIEVTTLNGK
YRKLLFWTDLDQPRAISLVPAQKLMIWCDWGEIPRIERASMDGDKYSRMILVSDRIYWPN
GLTVDIENNLIYWVDGKLQFLDVMNLDGSGRRTILKDLNYPYSVTYINRMLFWSDWNVGK
INSYDLSTGEQKEVIDDSEVPITVHAWHQVLQPSAPNPCKINNGNCSHLCLLSSTNIKGF
SCACPTGVKLLTDTLCADGPQNVIFLVQRTQISRISLDSPDYTSFPLSLGRVRSAISIDY
DPVDDFIYWSDEDQRVIKKSRQDGTLITDVINTEIKHPDGLAIDWIARNLLWTDSGSDRI
EVSRLNGLYRRVLINDNLDEPRGIAVAPTLGWMFWGDWGKKPKIERASLDGTERVVLISD
DLGWPNGITLDVDMKKLYWCDAKLDKIEVTNMDGSERRIILNENLPHIFGLSLFGNHIYW
TDWQRRTVERANKVTGNERIIIAEQFPDLMGLKVTKLQEIKGTNPCMNKNGGCTHLCLNR
PNDYVCRCQIDYELGRDRKSCSLPSAFLLFAKGKTIGRLSIEYNNNDDQNDHLIPFKDIR
DASHFDVDINDRRIYWVDQHSKCISRAYINGSEVQRVVDLGLITPEAVAVDWIGHNIFWA
DSDAKRIEVARLDGTSRRILVWRGIEEPKNLIIEPKRGFMYWTERPSDVIKRAAMDGSDI
QVIVSNANNPTSLTIDSDSRRIYWSTELEPTGIESADWDGKRRTILKLDGGDAEISFMPR
SLTLHQDYIYWVDWNSGDVERANKITGNNRTIVYKNLGEASSLMLFHNSKQTGTNPCQKN
NGGCSHLCLVLPGGRKKYTCACPTHHTLANDEMNCIPPRSYLIYSMKSSFGRMLPNSSDS
PDASLTVSTKFIRAVEYDPIQHYVYWIDGRGTVKKSLENATKPTLLIGGSGSHSQPFDLA
IDIIGRLLFWTCSHANTINITNLDGYAIGTVDTGNSEKPRSLAVHPTKRLLFWTDVGSRQ
AVIRAKMDGSNSMVLAIQLEGVTSLAVDPISNMLFFAHGRKIEFMDINGKNRKILTSSNI
NQVHSIAAFPNVIYWLDEKYGLEKATLDGDFIKLEKKYNHLTDIVAVWHPESKIIKNHLC
MSSRNKCTHICIATLNNSKADEFCSCPAGLMLLKDKKSCTAQPVCGPDHFTCASPYTSNG
YSGDNKDCIPYAWRCDGQNDCPDKSDEMDCPSCSSDQFRCNTGECIDKSFLCDGTTHCAD
GGDEAMCCNPGDFQCASNHVCIPNTFMCDGWEHCADGSDEINEICSVVTRKPPPTDKKLF
VVILIVLVLIIFFVVYILQICRNKFADTIREPKEDQASAPLSPGALNSLRMTKISSVADA
VRLTTMSRNSMNSYDRNNITGASSSTTNGSLIGYPSNPPPSPATTSTLHNSYPYKHYKVI
NQAPPTTPCSTDVCESDSNYTPISVKSSKRSADSCYGVNIYMGSSLNGSSNNKSY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 46 | g2360.t1 | CDD | cd00112 | LDLa | 1305 | 1350 | 6.97973E-12 |
| 45 | g2360.t1 | CDD | cd00112 | LDLa | 1353 | 1387 | 3.7114E-11 |
| 44 | g2360.t1 | CDD | cd00112 | LDLa | 1388 | 1422 | 4.07213E-10 |
| 31 | g2360.t1 | Gene3D | G3DSA:2.120.10.30 | TolB | 41 | 374 | 1.5E-92 |
| 30 | g2360.t1 | Gene3D | G3DSA:2.120.10.30 | TolB | 375 | 682 | 1.2E-123 |
| 32 | g2360.t1 | Gene3D | G3DSA:2.120.10.30 | TolB | 683 | 984 | 5.8E-96 |
| 33 | g2360.t1 | Gene3D | G3DSA:2.120.10.30 | TolB | 987 | 1303 | 7.8E-72 |
| 34 | g2360.t1 | Gene3D | G3DSA:4.10.400.10 | - | 1304 | 1355 | 2.9E-13 |
| 35 | g2360.t1 | Gene3D | G3DSA:4.10.400.10 | - | 1356 | 1386 | 1.4E-10 |
| 36 | g2360.t1 | Gene3D | G3DSA:4.10.400.10 | - | 1387 | 1428 | 7.8E-11 |
| 14 | g2360.t1 | PANTHER | PTHR46513:SF24 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN | 51 | 1579 | 0.0 |
| 15 | g2360.t1 | PANTHER | PTHR46513 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED | 51 | 1579 | 0.0 |
| 18 | g2360.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 1326 | 1347 | 5.8E-19 |
| 16 | g2360.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 1363 | 1384 | 5.8E-19 |
| 17 | g2360.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 1399 | 1420 | 5.8E-19 |
| 12 | g2360.t1 | Pfam | PF00058 | Low-density lipoprotein receptor repeat class B | 160 | 196 | 1.9E-5 |
| 8 | g2360.t1 | Pfam | PF00058 | Low-density lipoprotein receptor repeat class B | 207 | 246 | 5.4E-7 |
| 11 | g2360.t1 | Pfam | PF00058 | Low-density lipoprotein receptor repeat class B | 426 | 465 | 3.8E-4 |
| 7 | g2360.t1 | Pfam | PF00058 | Low-density lipoprotein receptor repeat class B | 469 | 506 | 1.6E-8 |
| 10 | g2360.t1 | Pfam | PF00058 | Low-density lipoprotein receptor repeat class B | 513 | 551 | 2.5E-11 |
| 6 | g2360.t1 | Pfam | PF00058 | Low-density lipoprotein receptor repeat class B | 556 | 587 | 1.8E-7 |
| 5 | g2360.t1 | Pfam | PF14670 | Coagulation Factor Xa inhibitory site | 646 | 681 | 1.7E-9 |
| 9 | g2360.t1 | Pfam | PF00058 | Low-density lipoprotein receptor repeat class B | 732 | 772 | 3.9E-4 |
| 13 | g2360.t1 | Pfam | PF00058 | Low-density lipoprotein receptor repeat class B | 818 | 856 | 2.1E-4 |
| 4 | g2360.t1 | Pfam | PF14670 | Coagulation Factor Xa inhibitory site | 957 | 995 | 1.9E-10 |
| 3 | g2360.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 1305 | 1350 | 1.9E-7 |
| 2 | g2360.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 1352 | 1387 | 1.8E-9 |
| 1 | g2360.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 1388 | 1423 | 8.3E-8 |
| 39 | g2360.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 28 | - |
| 40 | g2360.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 9 | - |
| 41 | g2360.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 10 | 21 | - |
| 43 | g2360.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 22 | 28 | - |
| 38 | g2360.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 29 | 1438 | - |
| 42 | g2360.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1439 | 1458 | - |
| 37 | g2360.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1459 | 1615 | - |
| 75 | g2360.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 1401 | 1425 | - |
| 87 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 115 | 159 | 5.422 |
| 92 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 160 | 202 | 13.289 |
| 80 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 203 | 248 | 12.5 |
| 79 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 249 | 290 | 11.177 |
| 81 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 425 | 467 | 14.379 |
| 91 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 468 | 510 | 14.611 |
| 90 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 511 | 554 | 14.727 |
| 84 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 555 | 597 | 14.379 |
| 86 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 598 | 638 | 7.511 |
| 89 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 732 | 774 | 14.403 |
| 88 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 775 | 817 | 14.379 |
| 93 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 818 | 859 | 12.291 |
| 83 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 860 | 886 | 7.418 |
| 77 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 907 | 949 | 9.715 |
| 85 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 1042 | 1085 | 7.488 |
| 78 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 1086 | 1128 | 9.692 |
| 76 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 1129 | 1171 | 11.015 |
| 82 | g2360.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 1172 | 1212 | 7.186 |
| 96 | g2360.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 1304 | 1351 | 13.125 |
| 94 | g2360.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 1352 | 1388 | 13.175 |
| 95 | g2360.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 1387 | 1426 | 12.312 |
| 64 | g2360.t1 | SMART | SM00135 | LY_2 | 77 | 119 | 9.2 |
| 59 | g2360.t1 | SMART | SM00135 | LY_2 | 140 | 182 | 1.9E-10 |
| 56 | g2360.t1 | SMART | SM00135 | LY_2 | 183 | 226 | 7.6E-4 |
| 69 | g2360.t1 | SMART | SM00135 | LY_2 | 229 | 271 | 3.9E-11 |
| 57 | g2360.t1 | SMART | SM00135 | LY_2 | 272 | 311 | 0.49 |
| 73 | g2360.t1 | SMART | SM00181 | egf_5 | 338 | 377 | 0.092 |
| 54 | g2360.t1 | SMART | SM00135 | LY_2 | 405 | 447 | 0.1 |
| 60 | g2360.t1 | SMART | SM00135 | LY_2 | 448 | 490 | 9.4E-13 |
| 66 | g2360.t1 | SMART | SM00135 | LY_2 | 491 | 534 | 6.6E-15 |
| 53 | g2360.t1 | SMART | SM00135 | LY_2 | 535 | 577 | 2.9E-15 |
| 65 | g2360.t1 | SMART | SM00135 | LY_2 | 578 | 618 | 1.3E-5 |
| 72 | g2360.t1 | SMART | SM00181 | egf_5 | 645 | 682 | 0.15 |
| 70 | g2360.t1 | SMART | SM00135 | LY_2 | 712 | 754 | 2.5E-5 |
| 67 | g2360.t1 | SMART | SM00135 | LY_2 | 755 | 797 | 3.3E-13 |
| 52 | g2360.t1 | SMART | SM00135 | LY_2 | 798 | 840 | 0.0027 |
| 55 | g2360.t1 | SMART | SM00135 | LY_2 | 841 | 883 | 0.0024 |
| 68 | g2360.t1 | SMART | SM00135 | LY_2 | 884 | 930 | 7.7 |
| 71 | g2360.t1 | SMART | SM00181 | egf_5 | 956 | 996 | 0.017 |
| 63 | g2360.t1 | SMART | SM00135 | LY_2 | 1063 | 1108 | 6.6 |
| 62 | g2360.t1 | SMART | SM00135 | LY_2 | 1109 | 1152 | 2.4E-6 |
| 61 | g2360.t1 | SMART | SM00135 | LY_2 | 1155 | 1192 | 0.067 |
| 58 | g2360.t1 | SMART | SM00135 | LY_2 | 1193 | 1232 | 23.0 |
| 74 | g2360.t1 | SMART | SM00181 | egf_5 | 1259 | 1300 | 11.0 |
| 50 | g2360.t1 | SMART | SM00192 | LDLa_2 | 1304 | 1352 | 2.2E-12 |
| 49 | g2360.t1 | SMART | SM00192 | LDLa_2 | 1353 | 1386 | 2.0E-5 |
| 51 | g2360.t1 | SMART | SM00192 | LDLa_2 | 1387 | 1427 | 7.7E-10 |
| 20 | g2360.t1 | SUPERFAMILY | SSF63825 | YWTD domain | 56 | 332 | 4.71E-38 |
| 21 | g2360.t1 | SUPERFAMILY | SSF63825 | YWTD domain | 385 | 634 | 1.7E-51 |
| 27 | g2360.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 642 | 684 | 2.76E-8 |
| 19 | g2360.t1 | SUPERFAMILY | SSF63825 | YWTD domain | 686 | 951 | 1.28E-41 |
| 26 | g2360.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 953 | 1004 | 6.18E-8 |
| 22 | g2360.t1 | SUPERFAMILY | SSF63825 | YWTD domain | 1011 | 1219 | 4.84E-27 |
| 24 | g2360.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 1301 | 1350 | 2.09E-7 |
| 25 | g2360.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 1352 | 1387 | 3.27E-8 |
| 23 | g2360.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 1386 | 1425 | 5.11E-9 |
| 29 | g2360.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 28 | - |
| 28 | g2360.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 28 | - |
| 47 | g2360.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
| 48 | g2360.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1439 | 1461 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K03068 (low density lipoprotein receptor-related protein 5/6)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
