General information for g2379.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Brefeldin A-inhibited guanine nucleotide-exchange protein 1.
Parent gene
- The parent gene g2379 is located on chr_3: 17468175..17469184 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2379 | g2379.t2 | isoform | g2379.t2 | 17468175 | 17469184 |
| chr_3 | g2379 | g2379.t2 | exon | g2379.t2.exon1 | 17468175 | 17468181 |
| chr_3 | g2379 | g2379.t2 | cds | g2379.t2.CDS1 | 17468176 | 17468181 |
| chr_3 | g2379 | g2379.t2 | exon | g2379.t2.exon2 | 17468292 | 17468692 |
| chr_3 | g2379 | g2379.t2 | cds | g2379.t2.CDS2 | 17468292 | 17468692 |
| chr_3 | g2379 | g2379.t2 | exon | g2379.t2.exon3 | 17468828 | 17468979 |
| chr_3 | g2379 | g2379.t2 | cds | g2379.t2.CDS3 | 17468828 | 17468960 |
| chr_3 | g2379 | g2379.t2 | exon | g2379.t2.exon4 | 17469049 | 17469184 |
| chr_3 | g2379 | g2379.t2 | TSS | g2379.t2 | 17469214 | 17469214 |
| chr_3 | g2379 | g2379.t2 | TTS | g2379.t2 | NA | NA |
Sequences
>g2379.t2 Gene=g2379 Length=696
TCTTTCAAAATAATAAATTGCAAAATAAATTCGTAAAATAGGGCTTAAACAGTTATCCAT
TTGGTTAATTATTTTGTTAATTACTTGTAGTTTGAGTGTTTTGCGAAATATTTCATCAGA
AATGCCAGATAATCGACGTAATTTTTGAGAAAAAAATGCAAAATTACCCCAATAAAACAA
AAGAAATGTTCATAGTACGAGCTTTAGAGAAAATTCTTGCAGACAAGGATATCAAACGAC
AGGGTCAGCTAAAAAAAGCATGTGAGTCGGCAATAACTACTCTGAAAGAAGAACTAAAGG
AAGAAAATGGACAAATTCCGACAAATAATGATCAACAACAACAACATTCTTCAGCTGCTT
TGCCTCTTCCTAAAAATGATTCTACAAACAGCATAAATGCAGAGAAATATTTTCTACCTT
TTGAATTAGCATGTCAGAGTAAAACACCTCGTATCGTTGTAACAGCTCTCGATTGTTTAC
AAAAATTGATTGCTTATGGTCATTTAACTGGAAATATTCCTGACTCCGCTAATCCTGGAA
AGTTTCTTATCGATAGAATCGTAACGACAATATGCAATTGTTTTATGGGCCCCCAAACAG
ATGAAGGCGTTCAACTTCAAATTATTAAGGCACTTCTCACTGTAGTAACATCGCAAAATG
TTGAAGTTCATGAAGGCACCGTTCTACAAGCTGTGC
>g2379.t2 Gene=g2379 Length=180
MQNYPNKTKEMFIVRALEKILADKDIKRQGQLKKACESAITTLKEELKEENGQIPTNNDQ
QQQHSSAALPLPKNDSTNSINAEKYFLPFELACQSKTPRIVVTALDCLQKLIAYGHLTGN
IPDSANPGKFLIDRIVTTICNCFMGPQTDEGVQLQIIKALLTVVTSQNVEVHEGTVLQAV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2379.t2 | Coils | Coil | Coil | 33 | 53 | - |
| 5 | g2379.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 74 | - |
| 4 | g2379.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 74 | - |
| 2 | g2379.t2 | PANTHER | PTHR10663:SF137 | BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 1 | 5 | 180 | 3.4E-70 |
| 3 | g2379.t2 | PANTHER | PTHR10663 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR | 5 | 180 | 3.4E-70 |
| 1 | g2379.t2 | Pfam | PF16213 | Dimerisation and cyclophilin-binding domain of Mon2 | 20 | 180 | 4.8E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
