General information for g2384.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2384 is located on chr_3: 17494195..17495803 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2384 | g2384.t3 | TSS | g2384.t3 | 17486241 | 17486241 |
| chr_3 | g2384 | g2384.t3 | isoform | g2384.t3 | 17487084 | 17492981 |
| chr_3 | g2384 | g2384.t3 | exon | g2384.t3.exon1 | 17487084 | 17487553 |
| chr_3 | g2384 | g2384.t3 | exon | g2384.t3.exon2 | 17489913 | 17490535 |
| chr_3 | g2384 | g2384.t3 | cds | g2384.t3.CDS1 | 17489958 | 17490535 |
| chr_3 | g2384 | g2384.t3 | exon | g2384.t3.exon3 | 17492977 | 17492981 |
| chr_3 | g2384 | g2384.t3 | cds | g2384.t3.CDS2 | 17492977 | 17492980 |
| chr_3 | g2384 | g2384.t3 | TTS | g2384.t3 | NA | NA |
Sequences
>g2384.t3 Gene=g2384 Length=1098
TTGAGTTGACCCTTGTTGTTTGATTAAAAACATTTTTTACAGGTGACTTAAAAGTAAAAT
TTTAAAAGCAAAGTTTTTTTAACAAACAAATATTGAGAGGGGCAAGACTGTTCAATCCAA
CATCAGACTTTTTCACTTTTATATCAAGCATTCACAACATACATGTACATTCAAAAATAA
AAGACTCACACTAAAGCGATTCAATATTCAGAACGAGTATGGATTTAGCTCGCTAAAGAA
AAAGTTTTTAAAAATTAATATGTATTGATTAAAACAAATGAAAAATAATAAAAATATAAA
ACTTATTGATTGATGTTAAATGCAAAAAGGAATCAAATGTGCAAAAATATAAAATCAAAA
GAATAAAGTGAAAAAAATGTTTCAATAAAATTCAATTTAAATGAGAGAAAACATTTTACA
CATTTAAAGTGATAAGAGTATAGTAAAACTTATCAAAAAAATCATTATCGTGAAAGAGAA
AAATAAGGAGAAAATACGAACAAACATAACTTTTTATGGACACACCGATCAAGTGTTTAA
AGAGCGAAAACGACAAAAAAGGAAGTTTCACAATAATTATACACATGAAGAAAATGGAGA
GTAATCATAATAATTCGTCATCGGCATCTGCCTTTCTACATCATCATCAACAGCAGCAGC
AACAACAACAACAGTCAGTTTTAGCAAATAGTAATCTTTTAAATGACACAAATAATACTA
AAATCAACAACAATCCAGTAGCAGTAGATAATAGTGGAAATGATAAAAGCAATAGTGGCA
AGAATGAATCAACTTTATCGTGTGGAAAGAAGGCTTTTTATAAATTAATATTTAATAAGT
CGTCGCCAGGATCAAATAATAATAATAACACTGGTAGCAATAATAATAATGATAACAACA
ATAATAGTAGTCATAACTCATCTATAATGGCGCCAACACCTCCACTCAATAATTCATATA
CAAAAGTATCAATGGAGCGGACAGGAAATGTCACAATCGAGAGCAAATTGAGCATCGATC
AAAGTCATCCTCATTCACCATCGCAACATGGAAACTCCCTCATTGTGAGTCCACAATCCA
ACGATACAAATCGATACA
>g2384.t3 Gene=g2384 Length=194
MDTPIKCLKSENDKKGSFTIIIHMKKMESNHNNSSSASAFLHHHQQQQQQQQQSVLANSN
LLNDTNNTKINNNPVAVDNSGNDKSNSGKNESTLSCGKKAFYKLIFNKSSPGSNNNNNTG
SNNNNDNNNNSSHNSSIMAPTPPLNNSYTKVSMERTGNVTIESKLSIDQSHPHSPSQHGN
SLIVSPQSNDTNRY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2384.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 54 | - |
| 1 | g2384.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 93 | - |
| 3 | g2384.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 194 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
