Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2387 g2387.t1 isoform g2387.t1 17531405 17531938
chr_3 g2387 g2387.t1 exon g2387.t1.exon1 17531405 17531938
chr_3 g2387 g2387.t1 cds g2387.t1.CDS1 17531405 17531938
chr_3 g2387 g2387.t1 TSS g2387.t1 NA NA
chr_3 g2387 g2387.t1 TTS g2387.t1 NA NA

Sequences

>g2387.t1 Gene=g2387 Length=534
ATGAATTACAACACTTACTCGGAATCGGACATGGAAAGTGAAACGAATTTTCAGCAACCG
ACATCGGGGAGAGTATCGAATAGTAACAATAATAATAACAATGGAGGCAATTTTGTTCGA
AATAATAGCATTAAGAATAGTAGTAGCAATAAGCAACAACAGCAGCACAAGCATCAACCA
AAGAGCTCAAATGTGAGACGGAGAGCAAGTGATTGCAGTTTCTATGGTTTAAGTGGCGAT
GGAGGCGATAATATAAGCTATTATGGTGTACCATTAAGAGGACAAAAGCGAGAGAGTTTA
AATGGCACAGGTCATGGAATGAATCGAAGCCACAGCAACAAGTCATCCTTATCATCATCA
TCAGGCGATGTGAGCAGTCATAGTGGCTCAAGCACCTGCAGTGGCGATGATACTACAAGT
ACATCGTCTGGTCCAAATCTTCCCTATCCAGGATTTGTAGAATACTCATTTAAATACTTA
AGTCAAGATGCTCTACTACGCAATTGGTGTCTTCAACTAATTACAAATCCATAA

>g2387.t1 Gene=g2387 Length=177
MNYNTYSESDMESETNFQQPTSGRVSNSNNNNNNGGNFVRNNSIKNSSSNKQQQQHKHQP
KSSNVRRRASDCSFYGLSGDGGDNISYYGVPLRGQKRESLNGTGHGMNRSHSNKSSLSSS
SGDVSSHSGSSTCSGDDTTSTSSGPNLPYPGFVEYSFKYLSQDALLRNWCLQLITNP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g2387.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 34 -
3 g2387.t1 MobiDBLite mobidb-lite consensus disorder prediction 46 68 -
2 g2387.t1 MobiDBLite mobidb-lite consensus disorder prediction 103 142 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed