General information for g2389.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Voltage-dependent T-type calcium channel subunit alpha-1G.
Parent gene
- The parent gene g2389 is located on chr_3: 17577080..17586256 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2389 | g2389.t1 | isoform | g2389.t1 | 17576370 | 17581450 |
| chr_3 | g2389 | g2389.t1 | exon | g2389.t1.exon1 | 17576370 | 17577080 |
| chr_3 | g2389 | g2389.t1 | cds | g2389.t1.CDS1 | 17576370 | 17577080 |
| chr_3 | g2389 | g2389.t1 | exon | g2389.t1.exon2 | 17577145 | 17577672 |
| chr_3 | g2389 | g2389.t1 | cds | g2389.t1.CDS2 | 17577145 | 17577672 |
| chr_3 | g2389 | g2389.t1 | exon | g2389.t1.exon3 | 17577732 | 17578928 |
| chr_3 | g2389 | g2389.t1 | cds | g2389.t1.CDS3 | 17577732 | 17578928 |
| chr_3 | g2389 | g2389.t1 | exon | g2389.t1.exon4 | 17579162 | 17579818 |
| chr_3 | g2389 | g2389.t1 | cds | g2389.t1.CDS4 | 17579162 | 17579818 |
| chr_3 | g2389 | g2389.t1 | exon | g2389.t1.exon5 | 17579936 | 17581450 |
| chr_3 | g2389 | g2389.t1 | cds | g2389.t1.CDS5 | 17579936 | 17581450 |
| chr_3 | g2389 | g2389.t1 | TSS | g2389.t1 | NA | NA |
| chr_3 | g2389 | g2389.t1 | TTS | g2389.t1 | NA | NA |
Sequences
>g2389.t1 Gene=g2389 Length=4608
ATGAAGATTCTAACGCAAGAGGACTGGAATGTAGTTTTATTCAATGGCATGGAAAAGACG
AGTCACTGGGCAGCATTATATTTTGTAACGTTAATGACTTTTGGCAATTATGTGTTGTTC
AATTTGTTGGTTGCCATTCTTGTTGAAGGCTTCAGTTCAGAGCGTCATGAACGACGTGAA
CGTGAGCAACGAGAAATTATTAAAGCTAAACTCAATGCAGAACAACAGCAGCTGCAAATG
CAACTTCAAATGCAAGAACAATTCAATGAAATGTTTCCACAGGACGATCTCAAAAGCTTC
TCAGATTCGACAACTTCTGATAGCTATAATGACCTTAAAAATCGCTGGTTTAGTGCTGAA
GAGTTGAGAAAATTGAACAATATTGAAAATATCAAATGCAATATTCAAAAACAAAAAATG
TTGCAAGGAGAAACTGTAAATGCAGTAGAAACTTGTGTTGATGGACAAATGCCAAATTAT
TTGTCAAAATCAAATCAGGAAAAGGAAATGCATCAACGACAAGGAAGTTATAAACGAAAA
CATCAGAGCATACGTGACAAAAATCGTTCAAATGACGGAACTCGAAAATTGCACGATCCT
CCACTTATAACAACCACAGCTGCAACACCACAAGACTCACCAAGTAATACTATGGAAATG
GGAACAAGTTTAAAAGACTGGGAACATGTTGAAATTGAAAATTTTGAAAGGGAGCCACCA
AAAATTCATTTAACACCGCCTTCAGTATTTGGATCGTTAAAAGCACTCGATGAAAGAATT
TTCCTCGAACGGTCGACATTCATATCAAAAATAGAACGTAACAGTCCGTCATCTCTTAGC
TCACACAGTGACCCTGGATCAAAACATTCACCTACAGGCTCAGCTGTGCTACCAACATGC
GTTGAACAATCTGGAGATGAAGAGCAACAAGACACAAAGATTGACATAACAATTACAGTT
GCATCACCTGCGCCTTCAAGAAAATCTAGCCTCAAAATTCGTCGTGGAAGTTCAAAAAGA
AAAAAAGTTGCACCGAAATCAGAGGGCATTCCACAAACTGAAATTTTAAACAACTGTAAA
CCATTACAATCACCTACAGGCGAAGAAATTCTATCAAAAAGCCACGGAAGTGGAGGAAGT
ATAGCGGATGACATTTGTGGTGACATACGAAAGTCATCGATACAATCTGATAAGGATGTT
TTACTTTCGAAAGCTAATTGTATTAAAAATGATACACAAGGAAACTCATACTCACGGATA
AATGTTCGTCGGTCATCATCAATTAAGAGCGACAGTCAACAACTACCATTACAACGAAAT
CAACAATATTTATCAAACAAATACATCAATAATCATCAATATTACAATTTCAATCGAAAA
AACTCTGTAAATGTCGCATCCATCCAACATCCACATTATTTTCATCAACAATATTATAAA
CGAAGAATGTCATCATTTGAACATCCGTTTGAAAAACAGTCAAACATCAATTTAAACAAT
TTTGAAGACTTTTTACAGAGAAGTATGAAAGTAGATCTTGAAAAATCAATATCGTCCATC
AGTAATGTGCCTGAACAATCACCGCAGCCACAACAGGCACCTTTGAAAAAAGACTCGAAA
ATGATGCAGTGGTTAAAAGAGGTCTCGAATTTTGATAAATATACAGAAGAACGTGAATCA
TATTCGCTATATATATTTCCTGAAACCAACAAATTTCGCAAGCTCTGTCAATGGTTTGTC
GATCAAAAGTGGTTCGACAATGTCATTCTATTATTTATCGCACTTAACTGCATCACTCTC
GCTATGGAACGACCAAACATTCCGCCCTGGAGTAAGGAACGATTTTTCCTCTCTACAGCC
AATTACGTGTTCACTGTGGTGTTTGCGATCGAGATGTTAATTAAGGTTGTTGCAACTGGC
ATGTTTTATGGGAATGATGCGTATTTTACATCGGGTTGGAATATCATGGATGGTTCGCTT
GTCATAATATCAATTATCGATTTACTCATGGGTCTGATAAGTGAATCAAGTCCGAGAATT
TTCGGAATTTTGCGAGTTTTTCGACTTTTAAGATCACTTCGGCCATTAAGAGTTATTAAT
CGTGCACCGGGATTAAAATTGGTTGTACAGACTTTGCTCTCTTCACTACGGCCTATCGGA
AATATTGTGCTGATTTGCTGCACATTCTTTATCATCTTTGGGATTCTCGGTGTACAGTTA
TTTAAAGGAACCTTCTATCATTGCGAGGGTGAAAACATCAAAGGCGTTCGTAATAAGACA
GATTGTCTAGAGCGACCAGGCAACGCATGGATAAACAGAAAGTATAATTTCGACGACTTG
GGAAAAGCTTTAATGTCACTTTTTGTGCTCTCATCTCGTGACGGATGGGTTAATATTATG
TATACGGGCTTGGATGCTGTCGGAGTCGATCAACAACCCATAGTAAATTACAACGAATGG
CGTCTACTATATTTTATCGCTTTCATTCTTCTCGTTGGATTTTTCGTACTAAACATGTTT
GTCGGTGTTGTCGTCGAGAATTTTCATCGATGTCGTGAAGAGCAAGAAAAGGAGGAAAAA
ATAAGACGTGCAGCAAAGCGCGCAATACAATTGGAAAAGAAGAGAAGACGTATGCATGAG
CCACCTTATTATACTAACTATTCACCGCTTAGAATGTTTGTGCATAATGTGGTGACATCA
AAATATTTTGACCTAGCCATCGCGGCTGTGATTGGTCTCAATGTAGTCACGATGGCCATG
GAATATTATATGATGCCATTAGCACTTGAATATGCACTTAAAATTTTCAATTACTTCTTT
ACGGCTGTATTTATCTTGGAAGCTATGATGAAATTAGTGGCACTTGGGTTGAAGCTCTAT
CTCAAAGATAAGTGGAATCAATTGGATGTATTCATTGTCATCCTTTCTATTGTTGGAATT
GCACTCGAAGAGGCTGAAAATAAAATTCTTCCCATTAATCCGACAATAATACGTGTTATG
AGAGTCTTGAGAATTGCACGAGTTCTAAAACTCTTAAAAATGGCAAAAGGTATTAGAGCC
TTACTTGACACTGTTATGCAAGCTTTGCCGCAGGTCGGTAACCTGGGGCTTTTGTTCTTC
TTGCTCTTCTTTATATTTGCTGCACTTGGTGTAGAATTGTTTGGTCGACTAGAATGTTCT
GATGAAATGCCATGCCAAGGTCTTGGTGAACATGCACATTTTGCAAACTTTGGTATGGCT
TTTTTGACACTCTTTCGCGTTGCAACTGGCGACAATTGGAATGGTATTATGAAAGACACA
TTACGAGACGAGTGCGATGATGCTGCAGATTGCGTGAAAAATTGCTGTGTCAGTGCTGTA
ATAGCGCCCATTTTTTTCGTCATTTTTGTATTAATGGCGCAATTTGTGCTCGTTAATGTA
GTTGTTGCGGTACTAATGAAGCATCTTGAAGAGAGCCATAAACAGATGGAAGATGACATG
GACATTGAGACTGAATTAGAGCGAGAAATCGAACGAGAACAGCTGTTCGAAGAGGAGCAA
GCTTTGTGTAAGGAATTAGAGCGTCAAAAAACAAACGTTCAAAAAAGACCATTGACGAAG
GTGGCATCACTTCCCTCAAATTTCACCTACAGTACACCCATCATCGAAAAAAAGTTTAAC
ACAAGTCGTCGACAGACAGTTCAATACTTTAATCCCCTGCTTGGTCCTAATCCAGGACCC
ATATCATTGCGTGAATGGAATCAACAGCCCAGTAGCACCATATGTGAATCAAATGAAAAC
GATTTGGATAATGATGGTGTACCAATAACGACAACGACAGTAACAACAACACGAACGGGA
TCGGTTGGCTCAAAACCACCGATAAATCGTAAAAATCTCTTACAGAAATTTCGCACACAG
AGCTTTGACGTTAAGCTGCTCTCAGATGCGGCAACATGCTCAATCGATGCGGTCGAGATG
GACAGCAATATCAAAATTGGACAATCAACAAATAGTAGTGGCAGTGGTGAGCAGAGAAGC
AGCAACATTAACAATAATTTATTGATAAGTAAGAAGCCGACAGCCAAAAAAATTAATTAT
CGTCAATCTAGCTTGGATTTTGATAATCGTTCAAGTGCATGTAAATTAATTGATAATAGT
AATTATGCTAGTAGTTCCATAGCAAATAAATCATTCTTGGCCGTGCCAAAATTGCAAGCA
ACGACAAGAAGTCGTTCGGGTAGTGCGAAACAGTTATTTAAACAGGCTGCTATAATGGAC
GAGGATGAACAAATTAATGAAAATAGTCTGCTGCTGCCAGACACAAGCATATCGCAATCA
TCAACCAATTCCATTCCACAAATACAACTTCCGCCTTGTGCCACAGGCAGCTTGAAAAAT
GTTAATGAAACCGCAACGGCATCCACGTCCTATTCCATACAACCAATTTCTGTCATTTCT
TCGTCATCGTCATCGAGTTCATCTGTGGGTCAACAACAGCAGCAGCAAGTTAAAATTACT
GAGCCCACAATACATACTCTCACGGTTGACGATGGAAAAGATGGCAATGTTAAAAAGTCA
GAATCGTGTGAATTGCTTAGAGTAATTTCAGAGCGTAGAAAACTGTGA
>g2389.t1 Gene=g2389 Length=1535
MKILTQEDWNVVLFNGMEKTSHWAALYFVTLMTFGNYVLFNLLVAILVEGFSSERHERRE
REQREIIKAKLNAEQQQLQMQLQMQEQFNEMFPQDDLKSFSDSTTSDSYNDLKNRWFSAE
ELRKLNNIENIKCNIQKQKMLQGETVNAVETCVDGQMPNYLSKSNQEKEMHQRQGSYKRK
HQSIRDKNRSNDGTRKLHDPPLITTTAATPQDSPSNTMEMGTSLKDWEHVEIENFEREPP
KIHLTPPSVFGSLKALDERIFLERSTFISKIERNSPSSLSSHSDPGSKHSPTGSAVLPTC
VEQSGDEEQQDTKIDITITVASPAPSRKSSLKIRRGSSKRKKVAPKSEGIPQTEILNNCK
PLQSPTGEEILSKSHGSGGSIADDICGDIRKSSIQSDKDVLLSKANCIKNDTQGNSYSRI
NVRRSSSIKSDSQQLPLQRNQQYLSNKYINNHQYYNFNRKNSVNVASIQHPHYFHQQYYK
RRMSSFEHPFEKQSNINLNNFEDFLQRSMKVDLEKSISSISNVPEQSPQPQQAPLKKDSK
MMQWLKEVSNFDKYTEERESYSLYIFPETNKFRKLCQWFVDQKWFDNVILLFIALNCITL
AMERPNIPPWSKERFFLSTANYVFTVVFAIEMLIKVVATGMFYGNDAYFTSGWNIMDGSL
VIISIIDLLMGLISESSPRIFGILRVFRLLRSLRPLRVINRAPGLKLVVQTLLSSLRPIG
NIVLICCTFFIIFGILGVQLFKGTFYHCEGENIKGVRNKTDCLERPGNAWINRKYNFDDL
GKALMSLFVLSSRDGWVNIMYTGLDAVGVDQQPIVNYNEWRLLYFIAFILLVGFFVLNMF
VGVVVENFHRCREEQEKEEKIRRAAKRAIQLEKKRRRMHEPPYYTNYSPLRMFVHNVVTS
KYFDLAIAAVIGLNVVTMAMEYYMMPLALEYALKIFNYFFTAVFILEAMMKLVALGLKLY
LKDKWNQLDVFIVILSIVGIALEEAENKILPINPTIIRVMRVLRIARVLKLLKMAKGIRA
LLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDEMPCQGLGEHAHFANFGMA
FLTLFRVATGDNWNGIMKDTLRDECDDAADCVKNCCVSAVIAPIFFVIFVLMAQFVLVNV
VVAVLMKHLEESHKQMEDDMDIETELEREIEREQLFEEEQALCKELERQKTNVQKRPLTK
VASLPSNFTYSTPIIEKKFNTSRRQTVQYFNPLLGPNPGPISLREWNQQPSSTICESNEN
DLDNDGVPITTTTVTTTRTGSVGSKPPINRKNLLQKFRTQSFDVKLLSDAATCSIDAVEM
DSNIKIGQSTNSSGSGEQRSSNINNNLLISKKPTAKKINYRQSSLDFDNRSSACKLIDNS
NYASSSIANKSFLAVPKLQATTRSRSGSAKQLFKQAAIMDEDEQINENSLLLPDTSISQS
STNSIPQIQLPPCATGSLKNVNETATASTSYSIQPISVISSSSSSSSSVGQQQQQQVKIT
EPTIHTLTVDDGKDGNVKKSESCELLRVISERRKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g2389.t1 | Coils | Coil | Coil | 59 | 79 | - |
| 14 | g2389.t1 | Coils | Coil | Coil | 854 | 874 | - |
| 15 | g2389.t1 | Coils | Coil | Coil | 1146 | 1196 | - |
| 10 | g2389.t1 | Gene3D | G3DSA:1.10.287.70 | - | 1 | 50 | 2.6E-16 |
| 11 | g2389.t1 | Gene3D | G3DSA:1.20.120.350 | - | 574 | 703 | 1.1E-34 |
| 8 | g2389.t1 | Gene3D | G3DSA:1.10.287.70 | - | 704 | 853 | 1.3E-23 |
| 12 | g2389.t1 | Gene3D | G3DSA:1.20.120.350 | - | 891 | 1015 | 6.2E-35 |
| 9 | g2389.t1 | Gene3D | G3DSA:1.10.287.70 | - | 1017 | 1154 | 9.4E-30 |
| 51 | g2389.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 219 | - |
| 53 | g2389.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 196 | - |
| 52 | g2389.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 219 | - |
| 50 | g2389.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 293 | - |
| 54 | g2389.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 361 | - |
| 4 | g2389.t1 | PANTHER | PTHR10037:SF230 | CA[2+]-CHANNEL PROTEIN ALPHA[[1]] SUBUNIT T, ISOFORM F | 2 | 1152 | 0.0 |
| 5 | g2389.t1 | PANTHER | PTHR10037 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM | 2 | 1152 | 0.0 |
| 3 | g2389.t1 | Pfam | PF00520 | Ion transport protein | 2 | 57 | 2.4E-8 |
| 2 | g2389.t1 | Pfam | PF00520 | Ion transport protein | 583 | 855 | 6.2E-65 |
| 1 | g2389.t1 | Pfam | PF00520 | Ion transport protein | 901 | 1155 | 2.4E-54 |
| 27 | g2389.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 23 | - |
| 32 | g2389.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 24 | 48 | - |
| 18 | g2389.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 49 | 583 | - |
| 30 | g2389.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 584 | 602 | - |
| 24 | g2389.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 603 | 621 | - |
| 35 | g2389.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 622 | 643 | - |
| 20 | g2389.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 644 | 654 | - |
| 36 | g2389.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 655 | 674 | - |
| 26 | g2389.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 675 | 718 | - |
| 31 | g2389.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 719 | 741 | - |
| 21 | g2389.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 742 | 821 | - |
| 28 | g2389.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 822 | 845 | - |
| 22 | g2389.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 846 | 901 | - |
| 38 | g2389.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 902 | 923 | - |
| 19 | g2389.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 924 | 934 | - |
| 33 | g2389.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 935 | 959 | - |
| 23 | g2389.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 960 | 964 | - |
| 29 | g2389.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 965 | 982 | - |
| 17 | g2389.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 983 | 1034 | - |
| 37 | g2389.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1035 | 1055 | - |
| 25 | g2389.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1056 | 1119 | - |
| 34 | g2389.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1120 | 1146 | - |
| 16 | g2389.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1147 | 1535 | - |
| 7 | g2389.t1 | SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 583 | 852 | 1.73E-39 |
| 6 | g2389.t1 | SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 900 | 1153 | 3.14E-35 |
| 43 | g2389.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 26 | 48 | - |
| 48 | g2389.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 584 | 601 | - |
| 41 | g2389.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 622 | 644 | - |
| 49 | g2389.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 659 | 681 | - |
| 45 | g2389.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 719 | 741 | - |
| 40 | g2389.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 823 | 845 | - |
| 47 | g2389.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 902 | 924 | - |
| 39 | g2389.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 939 | 961 | - |
| 42 | g2389.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1032 | 1054 | - |
| 46 | g2389.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1074 | 1096 | - |
| 44 | g2389.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1116 | 1138 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0005216 | ion channel activity | MF |
| GO:0006811 | ion transport | BP |
| GO:0005886 | plasma membrane | CC |
| GO:0005261 | cation channel activity | MF |
KEGG
Orthology
- This transcript has been annotated with K04854 (voltage-dependent calcium channel T type alpha-1G)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed