Gene loci information

Transcript annotation

  • This transcript has been annotated as Major heat shock 70 kDa protein Ab.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g240 g240.t1 isoform g240.t1 1917302 1917876
chr_3 g240 g240.t1 exon g240.t1.exon1 1917302 1917668
chr_3 g240 g240.t1 cds g240.t1.CDS1 1917302 1917668
chr_3 g240 g240.t1 exon g240.t1.exon2 1917734 1917876
chr_3 g240 g240.t1 cds g240.t1.CDS2 1917734 1917876
chr_3 g240 g240.t1 TTS g240.t1 1918573 1918573
chr_3 g240 g240.t1 TSS g240.t1 NA NA

Sequences

>g240.t1 Gene=g240 Length=510
ATGCAAAAATGGACAAAGGACAAAATTCATGATGTTGTCTTAGTTGGTGGTTCAACTCGA
ATTCCAAAAGTGCAGAAAATGTTGCAAGATTTCTTCAATGGCAAAGCATTGAACTTTTCA
ATCAATCCAGATGAAGCAGTTGCCTATGGTGCAGCAGTTCAAGCAGCTATTCTCACTGGT
GACAGCAGCGAACAAATTCAAGATGTTTTGCTAGTTGATGTCACTCCATTATCACTTGGA
ATTGAAACAGCAGGTGGAGTTATGACCAAATTAATTGAACGAAATGCAAGAATTCCATGC
AAACAACAGAAAACTTTCACCACATATTCTGATAATCAACCAGCAGTTACAATTCAAGTA
TTTGAAGCACCACGTGGAGTTCCACAAATTGAAGTCACATTCGATCTCGATGCAAATGGT
ATTTTGAATGTTTCAGCCAAAGATTCATCAACTGGCAAACAAGAAACAATCACAATTAAG
AATGACAAAAAGACGATGTTCAAAATCTGA

>g240.t1 Gene=g240 Length=169
MQKWTKDKIHDVVLVGGSTRIPKVQKMLQDFFNGKALNFSINPDEAVAYGAAVQAAILTG
DSSEQIQDVLLVDVTPLSLGIETAGGVMTKLIERNARIPCKQQKTFTTYSDNQPAVTIQV
FEAPRGVPQIEVTFDLDANGILNVSAKDSSTGKQETITIKNDKKTMFKI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g240.t1 Gene3D G3DSA:3.30.420.40 - 1 38 1.9E-13
14 g240.t1 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 54 122 1.2E-27
15 g240.t1 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 123 168 3.3E-17
4 g240.t1 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 3 122 1.5E-84
6 g240.t1 PANTHER PTHR19375:SF431 HEAT SHOCK PROTEIN 68 3 122 1.5E-84
3 g240.t1 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 123 165 1.5E-84
5 g240.t1 PANTHER PTHR19375:SF431 HEAT SHOCK PROTEIN 68 123 165 1.5E-84
7 g240.t1 PRINTS PR00301 70kDa heat shock protein signature 9 25 3.2E-47
10 g240.t1 PRINTS PR00301 70kDa heat shock protein signature 41 61 3.2E-47
9 g240.t1 PRINTS PR00301 70kDa heat shock protein signature 68 87 3.2E-47
8 g240.t1 PRINTS PR00301 70kDa heat shock protein signature 127 143 3.2E-47
1 g240.t1 Pfam PF00012 Hsp70 protein 4 122 4.1E-46
2 g240.t1 Pfam PF00012 Hsp70 protein 123 164 6.8E-12
13 g240.t1 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 12 26 -
12 g240.t1 SUPERFAMILY SSF53067 Actin-like ATPase domain 4 60 1.98E-17
11 g240.t1 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 64 164 6.54E-37

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values