General information for g2405.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Chitobiosyldiphosphodolichol beta-mannosyltransferase.
Parent gene
- The parent gene g2405 is located on chr_3: 17686501..17687452 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2405 | g2405.t2 | TTS | g2405.t2 | 17685869 | 17685869 |
| chr_3 | g2405 | g2405.t2 | isoform | g2405.t2 | 17686023 | 17686501 |
| chr_3 | g2405 | g2405.t2 | exon | g2405.t2.exon1 | 17686023 | 17686230 |
| chr_3 | g2405 | g2405.t2 | cds | g2405.t2.CDS1 | 17686023 | 17686230 |
| chr_3 | g2405 | g2405.t2 | exon | g2405.t2.exon2 | 17686289 | 17686501 |
| chr_3 | g2405 | g2405.t2 | cds | g2405.t2.CDS2 | 17686289 | 17686494 |
| chr_3 | g2405 | g2405.t2 | TSS | g2405.t2 | 17687507 | 17687507 |
Sequences
>g2405.t2 Gene=g2405 Length=421
AAAAACTATGTATCAACAAAAGATTGCAGAACAGAATTTTAAATTTGTAAAAATTATAAC
ACCATGGCTTGAAAATGAAGAGTATCCTTTGATGCTTGCTGCTGCAGATTTAGGTGTGTG
TCTGCATTACAGTTCTAGTGGCTTGGATTTACCAATGAAAGTTGTTGATATGTTTGGATG
TGGATTGCCTGTTTGTGCTATGAATTTTAAATGCCTGCACGAATTAGTTGTTGATGGAAA
AAATGGATTTGTTTTTAATGACTCCAAAGAATTGGGTAATCAATTAACGAATTGGTTTTA
TGGATTCCCAGGAAATGCAGCTTTATTAGCAATGAAAGATGAGTTTGCGAAAAATATTAA
AAAGTTTCATTCGCTTCGATGGAAAGAAAACTGGGAGAAAGTGGCTCTCAATCGGCTTTA
A
>g2405.t2 Gene=g2405 Length=137
MYQQKIAEQNFKFVKIITPWLENEEYPLMLAAADLGVCLHYSSSGLDLPMKVVDMFGCGL
PVCAMNFKCLHELVVDGKNGFVFNDSKELGNQLTNWFYGFPGNAALLAMKDEFAKNIKKF
HSLRWKENWEKVALNRL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g2405.t2 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 2 | 120 | 0.0e+00 |
| 2 | g2405.t2 | PANTHER | PTHR13036 | BETA1,4 MANNOSYLTRANSFERASE | 1 | 134 | 0.0e+00 |
| 1 | g2405.t2 | Pfam | PF13692 | Glycosyl transferases group 1 | 17 | 93 | 4.1e-06 |
| 3 | g2405.t2 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 3 | 97 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000030 | mannosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
