General information for g2405.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Chitobiosyldiphosphodolichol beta-mannosyltransferase.
Parent gene
- The parent gene g2405 is located on chr_3: 17686501..17687452 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2405 | g2405.t3 | TTS | g2405.t3 | 17685869 | 17685869 |
| chr_3 | g2405 | g2405.t3 | isoform | g2405.t3 | 17686023 | 17687452 |
| chr_3 | g2405 | g2405.t3 | exon | g2405.t3.exon1 | 17686023 | 17686230 |
| chr_3 | g2405 | g2405.t3 | cds | g2405.t3.CDS1 | 17686023 | 17686230 |
| chr_3 | g2405 | g2405.t3 | exon | g2405.t3.exon2 | 17686289 | 17687222 |
| chr_3 | g2405 | g2405.t3 | cds | g2405.t3.CDS2 | 17686289 | 17687199 |
| chr_3 | g2405 | g2405.t3 | exon | g2405.t3.exon3 | 17687306 | 17687452 |
| chr_3 | g2405 | g2405.t3 | TSS | g2405.t3 | 17687507 | 17687507 |
Sequences
>g2405.t3 Gene=g2405 Length=1289
ATGAGTACAAATCCAAGCCCAAAAACCAAAAGAGCATGGATAGTTGTGCTTGGAGATATT
GGAAGAAGTCCTCGAATGCAAAATCATGCAAAAAGCTTTGCAGAAAACAATCATTTAGTG
GAAGTAATAGGATATGATGAGTCAAGAACCCAAGAATTTCAATTAACAGAATGACACCAT
TCCCGGAGATTCAATTGCCTCGACTTGTGAAATACATTTTCAAAATATTCTGGAGTATAC
TATCGCTTTTGAGTGTCTTTTTGAGCGTCAAAAAAGCCGATTTATTAATGCTACAAAATC
CTCCTGGAATTCCTGCACTCTTTTTATGCTACTTCTATTGTAAAATCGTACAAGCCAAAT
TCATAATTGATTGGCATAATTATACGTGGACTATTATGGCTTTAGACACATCGCCACGCA
GTTTTATGGTCAAATTTGCAAAAACAATCGAATTCTATTTTGGTCGAAAGAGTGATTTAA
ATTTTTGTGTGACTGAAGCAATGAAACAAGATTTGCATGAGAATTATGATATTGAAGCAA
CTGTTCTTTATGATCGTCCTCCTGAAAAATTTCAACCAATATCAGTGGATAAAAAACATG
ATTTATTTGTGAATCTTGCAAAGGTTTATTCAGAATTCAGATCTGAAAAAGATTTTTATG
AAACAACAGCATTCACAACAAAAAGTGATAGCGGTGAAATCAAATTAAGAGACGATAGGC
CTGGATTAATTGTCTCTAGCACAAGTTGGACGCCAGATGAAGACTTTCAAGTGCTTCTAG
ACGCACTAATTTATTATGATAAAACAGCAGCAACTGATGACGTCAAATATCCAAAATTAA
TTTGTGCTATTACTGGCAAAGGACCACAAAAAACTATGTATCAACAAAAGATTGCAGAAC
AGAATTTTAAATTTGTAAAAATTATAACACCATGGCTTGAAAATGAAGAGTATCCTTTGA
TGCTTGCTGCTGCAGATTTAGGTGTGTGTCTGCATTACAGTTCTAGTGGCTTGGATTTAC
CAATGAAAGTTGTTGATATGTTTGGATGTGGATTGCCTGTTTGTGCTATGAATTTTAAAT
GCCTGCACGAATTAGTTGTTGATGGAAAAAATGGATTTGTTTTTAATGACTCCAAAGAAT
TGGGTAATCAATTAACGAATTGGTTTTATGGATTCCCAGGAAATGCAGCTTTATTAGCAA
TGAAAGATGAGTTTGCGAAAAATATTAAAAAGTTTCATTCGCTTCGATGGAAAGAAAACT
GGGAGAAAGTGGCTCTCAATCGGCTTTAA
>g2405.t3 Gene=g2405 Length=372
MTPFPEIQLPRLVKYIFKIFWSILSLLSVFLSVKKADLLMLQNPPGIPALFLCYFYCKIV
QAKFIIDWHNYTWTIMALDTSPRSFMVKFAKTIEFYFGRKSDLNFCVTEAMKQDLHENYD
IEATVLYDRPPEKFQPISVDKKHDLFVNLAKVYSEFRSEKDFYETTAFTTKSDSGEIKLR
DDRPGLIVSSTSWTPDEDFQVLLDALIYYDKTAATDDVKYPKLICAITGKGPQKTMYQQK
IAEQNFKFVKIITPWLENEEYPLMLAAADLGVCLHYSSSGLDLPMKVVDMFGCGLPVCAM
NFKCLHELVVDGKNGFVFNDSKELGNQLTNWFYGFPGNAALLAMKDEFAKNIKKFHSLRW
KENWEKVALNRL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2405.t3 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 171 | 345 | 5.4E-18 |
| 2 | g2405.t3 | PANTHER | PTHR13036 | BETA1,4 MANNOSYLTRANSFERASE | 10 | 369 | 1.8E-137 |
| 1 | g2405.t3 | Pfam | PF00534 | Glycosyl transferases group 1 | 180 | 321 | 5.3E-8 |
| 7 | g2405.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 11 | - |
| 8 | g2405.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 33 | - |
| 6 | g2405.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 34 | 372 | - |
| 4 | g2405.t3 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 14 | 348 | 4.6E-23 |
| 3 | g2405.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 31 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016757 | glycosyltransferase activity | MF |
| GO:0000030 | mannosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K03842 (beta-1,4-mannosyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed