Gene loci information

Transcript annotation

  • This transcript has been annotated as Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2408 g2408.t3 TTS g2408.t3 17725761 17725761
chr_3 g2408 g2408.t3 isoform g2408.t3 17726090 17727100
chr_3 g2408 g2408.t3 exon g2408.t3.exon1 17726090 17726887
chr_3 g2408 g2408.t3 cds g2408.t3.CDS1 17726091 17726887
chr_3 g2408 g2408.t3 exon g2408.t3.exon2 17726945 17727003
chr_3 g2408 g2408.t3 cds g2408.t3.CDS2 17726945 17727003
chr_3 g2408 g2408.t3 exon g2408.t3.exon3 17727060 17727100
chr_3 g2408 g2408.t3 cds g2408.t3.CDS3 17727060 17727100
chr_3 g2408 g2408.t3 TSS g2408.t3 17727190 17727190

Sequences

>g2408.t3 Gene=g2408 Length=898
ATGTCTAAGTTAAGAGTAAGCATTATTGGATCAGGCAATTGGGGATCAGCTATCGCAAAA
ATAGTTGGAAAGAATGTTGAAAAATTATCACAATTTGAAAATCGTGTGAATATGTATGTT
TATGAAGAAATGGTCAATGGAAAGAAACTATCTGAAATAATTAATGAAACACACGAAAAT
GTCAAGTATCTTCCTAATCACAAACTTCCAACAACAATAATAGCCGTTCCTGATCTTTTG
AAAGCTGTTGAAGATGCTGATATTTTGATCTTTGTAATTCCACATCAATTTGTCAAGAAT
GTTGGAAATCAACTCGCAGGAAAGATCAAAAATACTGCAATTGCTCTTTCTCTTATTAAA
GGATTTGATATCGCTGAAGGAGGTGGAATTGAATTGATTTCAAATGTCATTACAAAACAT
CTTCAAATACCTTGTTCAGTACTTATGGGCGCGAATCTTGCAAATGAAGTTGCTGATGAA
AAATTCTGTGAAACAACGATTGGTTGTCATAATCCAAAAACTTCGTTAATTTTAAAAGAA
TTAATACAAACTCCAAATTTCCGTGTGGTAACAACTGAAGATGTTGAGACTGTTGAAGTG
TGTGGTGCATTGAAAAATATCGTTGCATGTGGAGCTGGCTTTAGCGACGGTTTAGATCTC
GGTGACAACACTAAAGCAGCAATCATTCGTTTGGGACTAATGGAAATGATTAAATTTGTA
GAAGTGTTTTATGATAAGAATCATAAATTGTCAACATTCTTTGAGTCATGTGGGATTGCT
GATTTAGTGACAACATGCTATGGTGGACGAAATAGAAAATGCAGTGAAGCATTTGTAAGA
ACTGGCAGAAATTTTGATGAATTAGAAAAAGAAATGTTAAATGGTCAAAGATTACAGG

>g2408.t3 Gene=g2408 Length=299
MSKLRVSIIGSGNWGSAIAKIVGKNVEKLSQFENRVNMYVYEEMVNGKKLSEIINETHEN
VKYLPNHKLPTTIIAVPDLLKAVEDADILIFVIPHQFVKNVGNQLAGKIKNTAIALSLIK
GFDIAEGGGIELISNVITKHLQIPCSVLMGANLANEVADEKFCETTIGCHNPKTSLILKE
LIQTPNFRVVTTEDVETVEVCGALKNIVACGAGFSDGLDLGDNTKAAIIRLGLMEMIKFV
EVFYDKNHKLSTFFESCGIADLVTTCYGGRNRKCSEAFVRTGRNFDELEKEMLNGQRLQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g2408.t3 Gene3D G3DSA:3.40.50.720 - 1 191 5.8E-78
14 g2408.t3 Gene3D G3DSA:1.10.1040.10 - 194 299 2.1E-48
3 g2408.t3 PANTHER PTHR11728:SF8 GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)]-RELATED 2 299 1.1E-135
4 g2408.t3 PANTHER PTHR11728 GLYCEROL-3-PHOSPHATE DEHYDROGENASE 2 299 1.1E-135
15 g2408.t3 PIRSF PIRSF000114 Glycerol-3-P_dh 1 298 1.7E-83
8 g2408.t3 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 8 25 6.2E-81
10 g2408.t3 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 70 97 6.2E-81
5 g2408.t3 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 147 167 6.2E-81
9 g2408.t3 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 187 211 6.2E-81
7 g2408.t3 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 212 236 6.2E-81
6 g2408.t3 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 255 272 6.2E-81
1 g2408.t3 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 6 173 6.4E-51
2 g2408.t3 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 194 296 2.6E-34
16 g2408.t3 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 202 223 -
11 g2408.t3 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 2 194 5.41E-40
12 g2408.t3 SUPERFAMILY SSF48179 6-phosphogluconate dehydrogenase C-terminal domain-like 193 296 2.21E-32
17 g2408.t3 TIGRFAM TIGR03376 glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+)) 5 299 1.7E-130

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor MF
GO:0046168 glycerol-3-phosphate catabolic process BP
GO:0051287 NAD binding MF
GO:0055114 NA NA
GO:0042803 protein homodimerization activity MF
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity MF
GO:0006072 glycerol-3-phosphate metabolic process BP
GO:0009331 glycerol-3-phosphate dehydrogenase complex CC
GO:0005975 carbohydrate metabolic process BP
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed