General information for g2411.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2411 is located on chr_3: 17773953..17776801 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2411 | g2411.t2 | isoform | g2411.t2 | 17773953 | 17774789 |
| chr_3 | g2411 | g2411.t2 | exon | g2411.t2.exon1 | 17773953 | 17774128 |
| chr_3 | g2411 | g2411.t2 | exon | g2411.t2.exon2 | 17774192 | 17774789 |
| chr_3 | g2411 | g2411.t2 | cds | g2411.t2.CDS1 | 17774205 | 17774789 |
| chr_3 | g2411 | g2411.t2 | TTS | g2411.t2 | 17775329 | 17775329 |
| chr_3 | g2411 | g2411.t2 | TSS | g2411.t2 | NA | NA |
Sequences
>g2411.t2 Gene=g2411 Length=774
GTAATAATTCAACAAGATTTGAGAGATGAACTAAGTTCTCCATGTTTCACTGTCACACAT
TACAAGATATTGTTGAATTTGATAAAACTGAGCACAAGTCATTATTCGGCTATTCGTTCT
ACAGCACAATCAAGGTTATTTAGAATGTTAAACATTTATTGTTTTTCGTATAGAAGTATC
GTTGATACAATGATAGAATATTTGAAATTGGATCCAAATGAAAATCATGAGTCTTTCAAG
GGTGCACTTTATGTAATAGGTACAAATAGACGAAATCGTTTAATGCTTAAACACGATTGG
GAAGTTGTTGAAAAATTGTGGATGGCATTTTTAAAGACAAAACTTAGTGAAAAACTTTCT
GTTGTTCGTCTTATGGAATCAATAACTGAAGGAGTGAATAATGAGTTTCAAACAATCGCT
GTAGACATTGAAGTTAGTGACAAAATTGTTGATTTAGGTGTTAAAATGATGGTTGATAAA
ACAAAATTGCCTCAAAATTATCTTGAACATGGTGCACTAAAACTTGCTGCGAAAAATGAA
GAGAATCGTATTATTTATCATCGTTTGACAGATGAAATATTGAAATATTCACAAGAAAAG
ACATTGCATTGGCGTTATAATTTACTCTGTAGTACATTGATCAACGACTTGATGCATCCA
ACGGCCTATTATTCACCATTTGTTGCTGAAATATTTGTTAGGAATTTAATTCATGACTCT
GCTTTTGAGAGATCAATTGCATTGAAAATTTGCAATACAATCATGAAGCAACAA
>g2411.t2 Gene=g2411 Length=195
MIEYLKLDPNENHESFKGALYVIGTNRRNRLMLKHDWEVVEKLWMAFLKTKLSEKLSVVR
LMESITEGVNNEFQTIAVDIEVSDKIVDLGVKMMVDKTKLPQNYLEHGALKLAAKNEENR
IIYHRLTDEILKYSQEKTLHWRYNLLCSTLINDLMHPTAYYSPFVAEIFVRNLIHDSAFE
RSIALKICNTIMKQQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g2411.t2 | PANTHER | PTHR32170:SF3 | PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4 | 3 | 194 | 0 |
| g2411.t2 | PANTHER | PTHR32170 | PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4 | 3 | 194 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016504 | peptidase activator activity | MF |
| GO:0070628 | proteasome binding | MF |
| GO:0070577 | lysine-acetylated histone binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
