General information for g2418.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2418 is located on chr_3: 17869084..17870195 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2418 | g2418.t3 | isoform | g2418.t3 | 17869084 | 17870195 |
| chr_3 | g2418 | g2418.t3 | exon | g2418.t3.exon1 | 17869084 | 17869529 |
| chr_3 | g2418 | g2418.t3 | cds | g2418.t3.CDS1 | 17869086 | 17869529 |
| chr_3 | g2418 | g2418.t3 | TTS | g2418.t3 | 17869090 | 17869090 |
| chr_3 | g2418 | g2418.t3 | exon | g2418.t3.exon2 | 17869683 | 17869963 |
| chr_3 | g2418 | g2418.t3 | cds | g2418.t3.CDS2 | 17869683 | 17869963 |
| chr_3 | g2418 | g2418.t3 | exon | g2418.t3.exon3 | 17870057 | 17870195 |
| chr_3 | g2418 | g2418.t3 | cds | g2418.t3.CDS3 | 17870057 | 17870195 |
| chr_3 | g2418 | g2418.t3 | TSS | g2418.t3 | 17870389 | 17870389 |
Sequences
>g2418.t3 Gene=g2418 Length=866
ATGATATTTACATTTTATTACTTAGCAGCAACTTCCTTTCAATCGTGGCGATTGAGATCA
ATTCATCAGAAGATTGCACGAGTTTTGGATAATAACAACTCGATCGTATTTCTTAAAAAA
TCTGATGAAAATAGTCATGGCATGGCAACAGTTTTAGCGGCTTCCGAGATCTGCTCTAAC
TCTGGAGAAGCAGTTGTTCATGATTGCTTTTGGTCGAATGACCTATCACAAGCTATTTCT
GTGACACCAAAACAAATTCTTTACATCAATCCTTTCATAACATTCCCAATTGCTCCGAAT
CTCATTCCATTCAGCTTTGGGAATACTAATATCCCAGATTCGACTAAAAATGATGTCATT
CATGCCTTAATTGAAGCTGACCTAAATACACAAGAAAATGCGAATGCACCAGCTCTTGAG
ATTGAAGCTTTTGCGCATATGATTGCATGGAAAATTGATTCAAAATTATCGGTTCTAGTC
AAGACAGATTTAAAGCATTTATCTCAATTAATATTTGCCACTTTTATTCATAATCATTAT
ATTATCAATGATCAGCTTTCGCTAACACGCATCCAAACAGTAAATGTAGAGGGAGAAGCT
CAAGATATCAATGAGATATTAAAACACTCAAAGAAAGACATTTTGCTACGCTCAAGTGAG
TTACTTTCGCCTACCGATTGGGAGAAACATTTAGACGGAATCAAGAGTTTAGGAGTTCTT
GCCAATCAAGCATCCGAATTTAAATACAAAAAGAATTTGACAGAAGGAAAGACTGGAGTT
GTTGTTCAACCTGATTTAATTTCATCAAAGACTATTGAAGAAAGTCTGATTCGAAAAAAT
ATAGCATCACCTGATACACCAAAAAA
>g2418.t3 Gene=g2418 Length=288
MIFTFYYLAATSFQSWRLRSIHQKIARVLDNNNSIVFLKKSDENSHGMATVLAASEICSN
SGEAVVHDCFWSNDLSQAISVTPKQILYINPFITFPIAPNLIPFSFGNTNIPDSTKNDVI
HALIEADLNTQENANAPALEIEAFAHMIAWKIDSKLSVLVKTDLKHLSQLIFATFIHNHY
IINDQLSLTRIQTVNVEGEAQDINEILKHSKKDILLRSSELLSPTDWEKHLDGIKSLGVL
ANQASEFKYKKNLTEGKTGVVVQPDLISSKTIEESLIRKNIASPDTPK
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed