Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2418 g2418.t4 isoform g2418.t4 17869084 17870195
chr_3 g2418 g2418.t4 exon g2418.t4.exon1 17869084 17869529
chr_3 g2418 g2418.t4 cds g2418.t4.CDS1 17869086 17869529
chr_3 g2418 g2418.t4 TTS g2418.t4 17869090 17869090
chr_3 g2418 g2418.t4 exon g2418.t4.exon2 17869683 17869963
chr_3 g2418 g2418.t4 cds g2418.t4.CDS2 17869683 17869961
chr_3 g2418 g2418.t4 exon g2418.t4.exon3 17870091 17870195
chr_3 g2418 g2418.t4 TSS g2418.t4 17870389 17870389

Sequences

>g2418.t4 Gene=g2418 Length=832
ATGATATTTACATTTTATTACTTAGCAGCAACTTCCTTTCAATCGTGGCGATTGAGATCA
ATTCATCAGAAGATTGCACGAGTTTTGGATAATAACAACTCGATCGCATGGCAACAGTTT
TAGCGGCTTCCGAGATCTGCTCTAACTCTGGAGAAGCAGTTGTTCATGATTGCTTTTGGT
CGAATGACCTATCACAAGCTATTTCTGTGACACCAAAACAAATTCTTTACATCAATCCTT
TCATAACATTCCCAATTGCTCCGAATCTCATTCCATTCAGCTTTGGGAATACTAATATCC
CAGATTCGACTAAAAATGATGTCATTCATGCCTTAATTGAAGCTGACCTAAATACACAAG
AAAATGCGAATGCACCAGCTCTTGAGATTGAAGCTTTTGCGCATATGATTGCATGGAAAA
TTGATTCAAAATTATCGGTTCTAGTCAAGACAGATTTAAAGCATTTATCTCAATTAATAT
TTGCCACTTTTATTCATAATCATTATATTATCAATGATCAGCTTTCGCTAACACGCATCC
AAACAGTAAATGTAGAGGGAGAAGCTCAAGATATCAATGAGATATTAAAACACTCAAAGA
AAGACATTTTGCTACGCTCAAGTGAGTTACTTTCGCCTACCGATTGGGAGAAACATTTAG
ACGGAATCAAGAGTTTAGGAGTTCTTGCCAATCAAGCATCCGAATTTAAATACAAAAAGA
ATTTGACAGAAGGAAAGACTGGAGTTGTTGTTCAACCTGATTTAATTTCATCAAAGACTA
TTGAAGAAAGTCTGATTCGAAAAAATATAGCATCACCTGATACACCAAAAAA

>g2418.t4 Gene=g2418 Length=241
MATVLAASEICSNSGEAVVHDCFWSNDLSQAISVTPKQILYINPFITFPIAPNLIPFSFG
NTNIPDSTKNDVIHALIEADLNTQENANAPALEIEAFAHMIAWKIDSKLSVLVKTDLKHL
SQLIFATFIHNHYIINDQLSLTRIQTVNVEGEAQDINEILKHSKKDILLRSSELLSPTDW
EKHLDGIKSLGVLANQASEFKYKKNLTEGKTGVVVQPDLISSKTIEESLIRKNIASPDTP
K

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed