General information for g2419.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alpha-1,2-mannosyltransferase ALG9.
Parent gene
- The parent gene g2419 is located on chr_3: 17871420..17872812 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2419 | g2419.t1 | TSS | g2419.t1 | 17870683 | 17870683 |
| chr_3 | g2419 | g2419.t1 | isoform | g2419.t1 | 17870749 | 17872812 |
| chr_3 | g2419 | g2419.t1 | exon | g2419.t1.exon1 | 17870749 | 17870810 |
| chr_3 | g2419 | g2419.t1 | cds | g2419.t1.CDS1 | 17870749 | 17870810 |
| chr_3 | g2419 | g2419.t1 | exon | g2419.t1.exon2 | 17870945 | 17871123 |
| chr_3 | g2419 | g2419.t1 | cds | g2419.t1.CDS2 | 17870945 | 17871123 |
| chr_3 | g2419 | g2419.t1 | exon | g2419.t1.exon3 | 17871179 | 17871359 |
| chr_3 | g2419 | g2419.t1 | cds | g2419.t1.CDS3 | 17871179 | 17871359 |
| chr_3 | g2419 | g2419.t1 | exon | g2419.t1.exon4 | 17871420 | 17872812 |
| chr_3 | g2419 | g2419.t1 | cds | g2419.t1.CDS4 | 17871420 | 17872812 |
| chr_3 | g2419 | g2419.t1 | TTS | g2419.t1 | 17872905 | 17872905 |
Sequences
>g2419.t1 Gene=g2419 Length=1815
ATGAAAAGAAAGGAGTCATTAAAGTTGGGAAAATCAGGAACATCTTCGAGTTTTCGTCGT
CGAAGTTCCTCTTATCCAAATGCTGCCGTGAGTGTTCGTCCTCCACTATTTCCAACGCTT
CAAATTGCTTTTAAAGCTCTACTTTCAGCAAGAATTTGTGCCGCAATTTGGAGCTCAATA
AGTGATTGTGATGAAACTTATAATTATTGGGAAGAATTGCATTATTTATTATACAATAAA
GGTCTTCAAACGTGGGAATATAGTCCTCAATTTGCTCTCAGATCATACACGTATCTTCTT
GTTCATGGCGTGCCAGCATATATATACAAGGAAATTTTCGATCCCAATCCAATGCTTTTA
TTTTATTTTATAAGACTGTTACTTGGCATAAGTTGTGCTGTCGCAGAAGTTTATTTCTAC
AAAGGAATTTGTCGTGAATTTGGCGTGCATATTGGAAGGTCATGGTTGGTCTTTCAACTG
TTCAGTGCGGGAATGTTTATTTCTTCTGCCGCATTATTGCCAAGCTCATTTTCTATGTAC
TTTACGATGGCAGCACTTGCAGCATGGTGGCATCAACAATATAAATTAGCAATATTTTTT
ACTGCCATATCAGTGCTACTCGGATGGCCATTCGTTGGATTAATTTCGTTACCAATACTT
TACGATATCATTATAAGACGAAAAAAAATTAGGACATTTATTTTTTGGTCAATAATTTCT
GGTGTAACAGTTTTATTGCCAATGATAATTTTGGATTCTTCATATTATGGAAGAAATGTT
ATTGCTCCATTGAATATTGTTTTCTATAATATTTTTAAGAAAGATGGAGGACCGAATTTA
TATGGAACTGAGCCTTTTTCATATTACATATTTAACGGATTTTTGAATTTCAACATTATT
TGGTTGCTATCACTCATGACACCTGTTGCTCTTGTAATTGCACATTTTTTAGTTCCATCA
AAAAGCAAGCAATCAACTCTCTCATTGCCATATTATGTGAGTCTCAGTCCTTACTATTTA
TGGCTTGCAGTAATGATGGCTCAACCTCACAAAGAAGAACGTTTTCTATTTCCTGTCTAT
CCACTCGTCAGCTTATGTGGAGCAATTACAATAGATGTGTGCCAAAAATTATTTTTCCGC
ATCAAAAGTGCAATTGTCAAGTTTACAACAGCAACACACTACTTAAATCATACAACATTT
ATAACAGTGATTTTTGTCATTTTATCTGTGACATTGAATTTATCGAGAATTTTGGCATTA
TATCAAAACTATCATGCACCTATGGATGTATTTATGGAATTAAGCACTGCACGAGAAGAT
TTAGAAGATCCACATTCACAAAAAATGGATGTATGCATAGGGAAGGATTGGTATCGATAT
CCATCAAGTTTCTTTTTACCGTCAACAAAATATTCAATTCGATTTTTAAAATCAGAATTT
CGAGGCATGTTACCAGCTTATTATAGTGATGAAGAGAATGCAACACAAATTATTCACAAT
TACTTTAATGACATGAACCGCGAAAATGCTTTCATGTATTTCGATTATAACGACTGCGAT
TTACTAGTTGATTTAGATCTCAAAACAAAGAAGCATTCGCCACTCGAACCAAACTATTCG
TCCAGAACTGATGAATGGAATGTCGTCAAGGAAGTTCCGTTTCTTAATGCACAAGCTTCG
CACCCAATTTATCGCGCATTCTACATACCATTCGTTTCATATAAACATATAAAATACGGA
AGTTTTAACCTATTACAGAAAATCAAAGATTCTAGTGAAACAGTTGAATCTGATGTTGTT
GAGACAAATAATTAA
>g2419.t1 Gene=g2419 Length=604
MKRKESLKLGKSGTSSSFRRRSSSYPNAAVSVRPPLFPTLQIAFKALLSARICAAIWSSI
SDCDETYNYWEELHYLLYNKGLQTWEYSPQFALRSYTYLLVHGVPAYIYKEIFDPNPMLL
FYFIRLLLGISCAVAEVYFYKGICREFGVHIGRSWLVFQLFSAGMFISSAALLPSSFSMY
FTMAALAAWWHQQYKLAIFFTAISVLLGWPFVGLISLPILYDIIIRRKKIRTFIFWSIIS
GVTVLLPMIILDSSYYGRNVIAPLNIVFYNIFKKDGGPNLYGTEPFSYYIFNGFLNFNII
WLLSLMTPVALVIAHFLVPSKSKQSTLSLPYYVSLSPYYLWLAVMMAQPHKEERFLFPVY
PLVSLCGAITIDVCQKLFFRIKSAIVKFTTATHYLNHTTFITVIFVILSVTLNLSRILAL
YQNYHAPMDVFMELSTAREDLEDPHSQKMDVCIGKDWYRYPSSFFLPSTKYSIRFLKSEF
RGMLPAYYSDEENATQIIHNYFNDMNRENAFMYFDYNDCDLLVDLDLKTKKHSPLEPNYS
SRTDEWNVVKEVPFLNAQASHPIYRAFYIPFVSYKHIKYGSFNLLQKIKDSSETVESDVV
ETNN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g2419.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - |
| 2 | g2419.t1 | PANTHER | PTHR22760:SF2 | ALPHA-1,2-MANNOSYLTRANSFERASE ALG9 | 36 | 587 | 8.2E-184 |
| 3 | g2419.t1 | PANTHER | PTHR22760 | GLYCOSYLTRANSFERASE | 36 | 587 | 8.2E-184 |
| 1 | g2419.t1 | Pfam | PF03901 | Alg9-like mannosyltransferase family | 43 | 467 | 4.1E-103 |
| 17 | g2419.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 90 | - |
| 26 | g2419.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 91 | 108 | - |
| 22 | g2419.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 109 | 119 | - |
| 25 | g2419.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 120 | 139 | - |
| 16 | g2419.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 140 | 159 | - |
| 28 | g2419.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 160 | 190 | - |
| 21 | g2419.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 191 | 195 | - |
| 30 | g2419.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 196 | 221 | - |
| 14 | g2419.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 222 | 232 | - |
| 29 | g2419.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 233 | 251 | - |
| 18 | g2419.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 252 | 298 | - |
| 24 | g2419.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 299 | 317 | - |
| 15 | g2419.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 318 | 328 | - |
| 31 | g2419.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 329 | 347 | - |
| 20 | g2419.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 348 | 358 | - |
| 27 | g2419.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 359 | 379 | - |
| 13 | g2419.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 380 | 399 | - |
| 23 | g2419.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 400 | 421 | - |
| 19 | g2419.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 422 | 604 | - |
| 9 | g2419.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 118 | 140 | - |
| 7 | g2419.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 160 | 182 | - |
| 6 | g2419.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 197 | 219 | - |
| 8 | g2419.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 232 | 251 | - |
| 10 | g2419.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 299 | 318 | - |
| 5 | g2419.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 325 | 347 | - |
| 4 | g2419.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 357 | 379 | - |
| 11 | g2419.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 400 | 422 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016757 | glycosyltransferase activity | MF |
| GO:0000030 | mannosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K03846 (alpha-1,2-mannosyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
