Gene loci information

Transcript annotation

  • This transcript has been annotated as Alpha-1,2-mannosyltransferase ALG9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2419 g2419.t2 TSS g2419.t2 17870683 17870683
chr_3 g2419 g2419.t2 isoform g2419.t2 17870749 17872812
chr_3 g2419 g2419.t2 exon g2419.t2.exon1 17870749 17870810
chr_3 g2419 g2419.t2 exon g2419.t2.exon2 17870945 17871123
chr_3 g2419 g2419.t2 exon g2419.t2.exon3 17871179 17871363
chr_3 g2419 g2419.t2 exon g2419.t2.exon4 17871420 17872812
chr_3 g2419 g2419.t2 cds g2419.t2.CDS1 17871544 17872812
chr_3 g2419 g2419.t2 TTS g2419.t2 17872905 17872905

Sequences

>g2419.t2 Gene=g2419 Length=1819
ATGAAAAGAAAGGAGTCATTAAAGTTGGGAAAATCAGGAACATCTTCGAGTTTTCGTCGT
CGAAGTTCCTCTTATCCAAATGCTGCCGTGAGTGTTCGTCCTCCACTATTTCCAACGCTT
CAAATTGCTTTTAAAGCTCTACTTTCAGCAAGAATTTGTGCCGCAATTTGGAGCTCAATA
AGTGATTGTGATGAAACTTATAATTATTGGGAAGAATTGCATTATTTATTATACAATAAA
GGTCTTCAAACGTGGGAATATAGTCCTCAATTTGCTCTCAGATCATACACGTATCTTCTT
GTTCATGGCGTGCCAGCATATATATACAAGGAAATTTTCGATCCCAATCCAATGCTTTTA
TTTTATTTTATAAGACTGTTACTTGGCATAAGTTGTGCTGTCGCAGAAGTTTATTTCTAC
AAGTAAAGGAATTTGTCGTGAATTTGGCGTGCATATTGGAAGGTCATGGTTGGTCTTTCA
ACTGTTCAGTGCGGGAATGTTTATTTCTTCTGCCGCATTATTGCCAAGCTCATTTTCTAT
GTACTTTACGATGGCAGCACTTGCAGCATGGTGGCATCAACAATATAAATTAGCAATATT
TTTTACTGCCATATCAGTGCTACTCGGATGGCCATTCGTTGGATTAATTTCGTTACCAAT
ACTTTACGATATCATTATAAGACGAAAAAAAATTAGGACATTTATTTTTTGGTCAATAAT
TTCTGGTGTAACAGTTTTATTGCCAATGATAATTTTGGATTCTTCATATTATGGAAGAAA
TGTTATTGCTCCATTGAATATTGTTTTCTATAATATTTTTAAGAAAGATGGAGGACCGAA
TTTATATGGAACTGAGCCTTTTTCATATTACATATTTAACGGATTTTTGAATTTCAACAT
TATTTGGTTGCTATCACTCATGACACCTGTTGCTCTTGTAATTGCACATTTTTTAGTTCC
ATCAAAAAGCAAGCAATCAACTCTCTCATTGCCATATTATGTGAGTCTCAGTCCTTACTA
TTTATGGCTTGCAGTAATGATGGCTCAACCTCACAAAGAAGAACGTTTTCTATTTCCTGT
CTATCCACTCGTCAGCTTATGTGGAGCAATTACAATAGATGTGTGCCAAAAATTATTTTT
CCGCATCAAAAGTGCAATTGTCAAGTTTACAACAGCAACACACTACTTAAATCATACAAC
ATTTATAACAGTGATTTTTGTCATTTTATCTGTGACATTGAATTTATCGAGAATTTTGGC
ATTATATCAAAACTATCATGCACCTATGGATGTATTTATGGAATTAAGCACTGCACGAGA
AGATTTAGAAGATCCACATTCACAAAAAATGGATGTATGCATAGGGAAGGATTGGTATCG
ATATCCATCAAGTTTCTTTTTACCGTCAACAAAATATTCAATTCGATTTTTAAAATCAGA
ATTTCGAGGCATGTTACCAGCTTATTATAGTGATGAAGAGAATGCAACACAAATTATTCA
CAATTACTTTAATGACATGAACCGCGAAAATGCTTTCATGTATTTCGATTATAACGACTG
CGATTTACTAGTTGATTTAGATCTCAAAACAAAGAAGCATTCGCCACTCGAACCAAACTA
TTCGTCCAGAACTGATGAATGGAATGTCGTCAAGGAAGTTCCGTTTCTTAATGCACAAGC
TTCGCACCCAATTTATCGCGCATTCTACATACCATTCGTTTCATATAAACATATAAAATA
CGGAAGTTTTAACCTATTACAGAAAATCAAAGATTCTAGTGAAACAGTTGAATCTGATGT
TGTTGAGACAAATAATTAA

>g2419.t2 Gene=g2419 Length=422
MAALAAWWHQQYKLAIFFTAISVLLGWPFVGLISLPILYDIIIRRKKIRTFIFWSIISGV
TVLLPMIILDSSYYGRNVIAPLNIVFYNIFKKDGGPNLYGTEPFSYYIFNGFLNFNIIWL
LSLMTPVALVIAHFLVPSKSKQSTLSLPYYVSLSPYYLWLAVMMAQPHKEERFLFPVYPL
VSLCGAITIDVCQKLFFRIKSAIVKFTTATHYLNHTTFITVIFVILSVTLNLSRILALYQ
NYHAPMDVFMELSTAREDLEDPHSQKMDVCIGKDWYRYPSSFFLPSTKYSIRFLKSEFRG
MLPAYYSDEENATQIIHNYFNDMNRENAFMYFDYNDCDLLVDLDLKTKKHSPLEPNYSSR
TDEWNVVKEVPFLNAQASHPIYRAFYIPFVSYKHIKYGSFNLLQKIKDSSETVESDVVET
NN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g2419.t2 PANTHER PTHR22760:SF2 ALPHA-1,2-MANNOSYLTRANSFERASE ALG9 1 405 9.7E-115
3 g2419.t2 PANTHER PTHR22760 GLYCOSYLTRANSFERASE 1 405 9.7E-115
1 g2419.t2 Pfam PF03901 Alg9-like mannosyltransferase family 9 285 8.9E-53
15 g2419.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 13 -
18 g2419.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 14 39 -
12 g2419.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 40 50 -
21 g2419.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 51 69 -
13 g2419.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 70 116 -
17 g2419.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 117 135 -
10 g2419.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 136 146 -
22 g2419.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 147 165 -
14 g2419.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 166 176 -
20 g2419.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 177 197 -
11 g2419.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 198 217 -
19 g2419.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 218 239 -
16 g2419.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 240 422 -
7 g2419.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 15 37 -
6 g2419.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 50 69 -
4 g2419.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 117 136 -
9 g2419.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 143 165 -
5 g2419.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 175 197 -
8 g2419.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 218 240 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016757 glycosyltransferase activity MF
GO:0000030 mannosyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed