Gene loci information

Transcript annotation

  • This transcript has been annotated as Alpha-1,2-mannosyltransferase ALG9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2419 g2419.t4 TSS g2419.t4 17870683 17870683
chr_3 g2419 g2419.t4 isoform g2419.t4 17871420 17872812
chr_3 g2419 g2419.t4 exon g2419.t4.exon1 17871420 17872812
chr_3 g2419 g2419.t4 cds g2419.t4.CDS1 17871490 17872812
chr_3 g2419 g2419.t4 TTS g2419.t4 17872905 17872905

Sequences

>g2419.t4 Gene=g2419 Length=1393
AGGAATTTGTCGTGAATTTGGCGTGCATATTGGAAGGTCATGGTTGGTCTTTCAACTGTT
CAGTGCGGGAATGTTTATTTCTTCTGCCGCATTATTGCCAAGCTCATTTTCTATGTACTT
TACGATGGCAGCACTTGCAGCATGGTGGCATCAACAATATAAATTAGCAATATTTTTTAC
TGCCATATCAGTGCTACTCGGATGGCCATTCGTTGGATTAATTTCGTTACCAATACTTTA
CGATATCATTATAAGACGAAAAAAAATTAGGACATTTATTTTTTGGTCAATAATTTCTGG
TGTAACAGTTTTATTGCCAATGATAATTTTGGATTCTTCATATTATGGAAGAAATGTTAT
TGCTCCATTGAATATTGTTTTCTATAATATTTTTAAGAAAGATGGAGGACCGAATTTATA
TGGAACTGAGCCTTTTTCATATTACATATTTAACGGATTTTTGAATTTCAACATTATTTG
GTTGCTATCACTCATGACACCTGTTGCTCTTGTAATTGCACATTTTTTAGTTCCATCAAA
AAGCAAGCAATCAACTCTCTCATTGCCATATTATGTGAGTCTCAGTCCTTACTATTTATG
GCTTGCAGTAATGATGGCTCAACCTCACAAAGAAGAACGTTTTCTATTTCCTGTCTATCC
ACTCGTCAGCTTATGTGGAGCAATTACAATAGATGTGTGCCAAAAATTATTTTTCCGCAT
CAAAAGTGCAATTGTCAAGTTTACAACAGCAACACACTACTTAAATCATACAACATTTAT
AACAGTGATTTTTGTCATTTTATCTGTGACATTGAATTTATCGAGAATTTTGGCATTATA
TCAAAACTATCATGCACCTATGGATGTATTTATGGAATTAAGCACTGCACGAGAAGATTT
AGAAGATCCACATTCACAAAAAATGGATGTATGCATAGGGAAGGATTGGTATCGATATCC
ATCAAGTTTCTTTTTACCGTCAACAAAATATTCAATTCGATTTTTAAAATCAGAATTTCG
AGGCATGTTACCAGCTTATTATAGTGATGAAGAGAATGCAACACAAATTATTCACAATTA
CTTTAATGACATGAACCGCGAAAATGCTTTCATGTATTTCGATTATAACGACTGCGATTT
ACTAGTTGATTTAGATCTCAAAACAAAGAAGCATTCGCCACTCGAACCAAACTATTCGTC
CAGAACTGATGAATGGAATGTCGTCAAGGAAGTTCCGTTTCTTAATGCACAAGCTTCGCA
CCCAATTTATCGCGCATTCTACATACCATTCGTTTCATATAAACATATAAAATACGGAAG
TTTTAACCTATTACAGAAAATCAAAGATTCTAGTGAAACAGTTGAATCTGATGTTGTTGA
GACAAATAATTAA

>g2419.t4 Gene=g2419 Length=440
MFISSAALLPSSFSMYFTMAALAAWWHQQYKLAIFFTAISVLLGWPFVGLISLPILYDII
IRRKKIRTFIFWSIISGVTVLLPMIILDSSYYGRNVIAPLNIVFYNIFKKDGGPNLYGTE
PFSYYIFNGFLNFNIIWLLSLMTPVALVIAHFLVPSKSKQSTLSLPYYVSLSPYYLWLAV
MMAQPHKEERFLFPVYPLVSLCGAITIDVCQKLFFRIKSAIVKFTTATHYLNHTTFITVI
FVILSVTLNLSRILALYQNYHAPMDVFMELSTAREDLEDPHSQKMDVCIGKDWYRYPSSF
FLPSTKYSIRFLKSEFRGMLPAYYSDEENATQIIHNYFNDMNRENAFMYFDYNDCDLLVD
LDLKTKKHSPLEPNYSSRTDEWNVVKEVPFLNAQASHPIYRAFYIPFVSYKHIKYGSFNL
LQKIKDSSETVESDVVETNN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g2419.t4 PANTHER PTHR22760:SF2 ALPHA-1,2-MANNOSYLTRANSFERASE ALG9 1 423 4.1E-124
3 g2419.t4 PANTHER PTHR22760 GLYCOSYLTRANSFERASE 1 423 4.1E-124
1 g2419.t4 Pfam PF03901 Alg9-like mannosyltransferase family 1 303 2.9E-58
11 g2419.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 6 -
24 g2419.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 7 26 -
17 g2419.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 27 31 -
23 g2419.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 32 57 -
13 g2419.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 58 68 -
22 g2419.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 69 87 -
15 g2419.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 88 134 -
21 g2419.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 135 153 -
12 g2419.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 154 164 -
20 g2419.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 165 183 -
18 g2419.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 184 194 -
19 g2419.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 195 215 -
14 g2419.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 216 235 -
25 g2419.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 236 257 -
16 g2419.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 258 440 -
8 g2419.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 2 24 -
10 g2419.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 34 56 -
7 g2419.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 69 87 -
6 g2419.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 135 154 -
9 g2419.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 161 183 -
4 g2419.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 193 215 -
5 g2419.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 236 258 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016757 glycosyltransferase activity MF
GO:0000030 mannosyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values