Gene loci information

Transcript annotation

  • This transcript has been annotated as G protein-coupled receptor kinase 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2428 g2428.t3 isoform g2428.t3 17925626 17926731
chr_3 g2428 g2428.t3 exon g2428.t3.exon1 17925626 17926055
chr_3 g2428 g2428.t3 cds g2428.t3.CDS1 17925759 17926055
chr_3 g2428 g2428.t3 exon g2428.t3.exon2 17926126 17926731
chr_3 g2428 g2428.t3 cds g2428.t3.CDS2 17926126 17926707
chr_3 g2428 g2428.t3 TSS g2428.t3 NA NA
chr_3 g2428 g2428.t3 TTS g2428.t3 NA NA

Sequences

>g2428.t3 Gene=g2428 Length=1036
GATTTAAAATTTCATATCTATAATATGGGTGGTGAGCCAGGTTTTGAGTTACCTAGAGCG
CGTTTCTATTCAGCTGAGGTTGTGTGTGGCCTAGAGCATCTGCATCAGCAGGGAATTGTT
TATAGAGACTGCAAACCAGAAAATATTTTACTGGATGACCATGGTCATGTGAGAATTTCA
GATTTGGGATTAGCTGTTGAAATACCAGAAGGTGAAATGGTGCGTGGTCGTGTTGGAACT
GTTGGTTATATGGCACCAGAAGTCATTGATAATGAAAAATATTCATTTTCACCGGACTGG
TTTAGTTTTGGTTGTCTCATATACGAAATGATTGAAGGTCAGGCGCCATTTAGAGCTCGA
AAAGAGAAAGTGAAACGAGAAGAAGTTGATAGACGTGTGAAAGAAGATGCCGAAAAATAT
TCATCAAAATTTAGTGAAGAAGCCAAATCGCTGTGTCAACAATTGTTAATAAAATCACCG
AAGAATCGATTGGGTTGTAAAAATGGTCGCTATGGAGCACGTGAAGTTAAGTTATCATCA
TTCTTTAGCGCCATCAATTGGAAACGACTTGAAGCAGGCATGGTGGAGCCCCCATTTATT
CCAGACCCACATGCTGTTTACGCAAAAGATGTATTAGACATTGAACAATTTTCTACGGTG
AAAGGTGTTAATTTAGATGCTACTGATGAGAATTTCTATTCTAAATTCAATACCGGATCA
GTGTCGATACCATGGCAAAATGAAATGATTGAAACTGATTGTGTGCGAGAACTGAATATC
TTTGGTCCAGACGATAGTCCGACTCCCGATTTGATATTGAATGCACCCATTATTGAAGAA
AAACAAGGATGCTTTCCATTTAGAAGAAAGGTATACATATTACACATAATTTTATCATCA
TAGATAATTTTTTTTATTTTCAATAAATATTTATTTCTAGAAAAAGCAACTTCCTCGAAC
AAAACCAATTCCCGTACCCGAACATCTTTTGACACCTAGTCAAGCAGAAACAATAAGCGC
AACAAATGAAAGCTGA

>g2428.t3 Gene=g2428 Length=292
MGGEPGFELPRARFYSAEVVCGLEHLHQQGIVYRDCKPENILLDDHGHVRISDLGLAVEI
PEGEMVRGRVGTVGYMAPEVIDNEKYSFSPDWFSFGCLIYEMIEGQAPFRARKEKVKREE
VDRRVKEDAEKYSSKFSEEAKSLCQQLLIKSPKNRLGCKNGRYGAREVKLSSFFSAINWK
RLEAGMVEPPFIPDPHAVYAKDVLDIEQFSTVKGVNLDATDENFYSKFNTGSVSIPWQNE
MIETDCVRELNIFGPDDSPTPDLILNAPIIEEKQGCFPFRRKVYILHIILSS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g2428.t3 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 7 194 0.000
6 g2428.t3 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 197 269 0.000
2 g2428.t3 PANTHER PTHR24355:SF28 G PROTEIN-COUPLED RECEPTOR KINASE 2 1 282 0.000
3 g2428.t3 PANTHER PTHR24355 G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE 1 282 0.000
1 g2428.t3 Pfam PF00069 Protein kinase domain 10 160 0.000
9 g2428.t3 ProSiteProfiles PS50011 Protein kinase domain profile. 1 174 30.096
8 g2428.t3 ProSiteProfiles PS51285 AGC-kinase C-terminal domain profile. 175 240 10.524
5 g2428.t3 SMART SM00133 pkinase_C_6 175 254 0.000
4 g2428.t3 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 6 255 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004674 protein serine/threonine kinase activity MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values