General information for g2455.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein tamozhennic.
Parent gene
- The parent gene g2455 is located on chr_3: 18057714..18059264 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2455 | g2455.t1 | TTS | g2455.t1 | 18055444 | 18055444 |
| chr_3 | g2455 | g2455.t1 | isoform | g2455.t1 | 18055994 | 18058505 |
| chr_3 | g2455 | g2455.t1 | exon | g2455.t1.exon1 | 18055994 | 18057348 |
| chr_3 | g2455 | g2455.t1 | cds | g2455.t1.CDS1 | 18055994 | 18057348 |
| chr_3 | g2455 | g2455.t1 | exon | g2455.t1.exon2 | 18057713 | 18058061 |
| chr_3 | g2455 | g2455.t1 | cds | g2455.t1.CDS2 | 18057713 | 18058061 |
| chr_3 | g2455 | g2455.t1 | exon | g2455.t1.exon3 | 18058123 | 18058391 |
| chr_3 | g2455 | g2455.t1 | cds | g2455.t1.CDS3 | 18058123 | 18058391 |
| chr_3 | g2455 | g2455.t1 | exon | g2455.t1.exon4 | 18058451 | 18058505 |
| chr_3 | g2455 | g2455.t1 | cds | g2455.t1.CDS4 | 18058451 | 18058505 |
| chr_3 | g2455 | g2455.t1 | TSS | g2455.t1 | 18059264 | 18059264 |
Sequences
>g2455.t1 Gene=g2455 Length=2028
ATGACGACTATGTATGGACGAGATCCATTGGAAGAATTATGGAAAGAGATTTTAGATCTT
CATTGGAACTACCTCGAGATGGAAGAGAGCTTAAAGAAAATTGATGAACGAAAAAAGCTG
GAAGGACGATTGAGAGAATATATAAGTATTGTGCCACATGATAGGAAATTTTTCTTACCT
GAAACAGAACATGTTCTTCGCATAAGCATACAACAAATGCGAGATTTTTCAGCTTTCAAA
GGCGCCATCGGATTTGAGTCAATTAGTCAGTATGCAAATAATCTTTTCACAAAGCCTTGG
CGAAAGGAATATAGAGTGATCAAGATGTATTCGGGATTTTATCAGCATGAAATTAGAAAC
AATTTACTCGATGCAGAGAAAATTTTTATCGCAATGGGCTACAAATTAATGCCAAATCAA
ACGCTTGTTCTTGAAGGCCCGATATGTCCAGATCAAGTGACAAATGTAAGTCGTGATGCA
CTCACTGCTTATGTAGAGTGTCAAATAATGAAGCAAGTCAATAGTGAACTGACCTCAATT
GGCCTCGCAACGACGTGGAATGAAATTTTTAATTTCCGCGAATGTCACATTGGTGACTCA
TCTCAGACGATCAAAGGTCTAACACAGATGCTGCAATCACATCACATACACATGCACGGA
GCTATGAGAAAGGATCCATATGCTTTGGCTCTTACATCACCGCCTATGCACCATCATTAT
CAACAGCAACAGCAAGCGCAACTTTGTAGTACACATTGTAGCATTCACCATCCTCATCCG
TACAATCATCAAAATACCCTGCCACCACCACCTCTACCCGCGACCACAAATGTGCAACAG
CAAGCACCTAATTCATATTATCATCATTACAATCAGCCTCCACCACCACCACCGCCCTGC
TCACTTCACTATGTGCCACAACAAAATTGTTATCAACATCACCTTCCGCACTCAAAATCA
CTCGATCAATATGATGGCACAAAAATACAACAAGGAAATGGTGGAGTAAATCATCATCGA
TTGTCATTAGATCATAATTATAAGCAGCAACAACAACAACAGCAGCAGCAACAGCAGACA
CATTTCGATTACATTGATGTTGCGTTCAATCATCCATACAATCAACCAAATTCAAGAGCT
CCTCTTCCTTATAATATCTCATCAAATTTAGGTCATGATGCTGGCTATTATCCAACGACT
GATCATACGAGAATGTTTAGCACAAATGAATTTTATCAGCAACAATTAATGCAGCAACTG
CCAACGACAGTCAATGACTATCATCATTCACATCATCAAAAAAGCTGTAATTATTCAGAT
GCTTCTTCACCTGCTGTCCATGATGAGCTTATTTCATTTTCAAACGAGCCAGTTAGAATT
AAACCGTCATCAGAAGCAAAACTGCGGAGTAGTTTGAAAAAAGGCACACAAAGTACAACT
GCCTCAGATAGTGTCGATATGGAACAAGAATTAAATGAATTAAGAGCATTGAAGAGAGAA
AAATCATCAACTCCTGCGAGTACAAGTAGTGATGTAAAAACACGAGATGGGATTGGAAAT
TATCAAGCTTGGGATTATGTCTTTCAAAATCTCGAGAAAGAAGAAAAGAAAAATCATAAA
ACGCCAACGGCTGATGAAAAAATTGCAGTTGAACTTGAAAATTTGAAAGTAACATCAAAT
GGACATGGACCACCAAGAGATCGCTCGCTATCACATAAGAGCAATAATATAAAACCATCA
TCATCATCAAGTAGTCATCATACGAAAACAAGAACAAAATCAGTATCAGCAGCAACAAGT
GATACACAAGCGAGCAATCATGAGCACAAACGAACGTCGTCTGTGATGGAAAGCAATCAA
AGAGTGCAAATGCCAAAAGCGCCAGAATTAATAGTTGGAATTAACGAATGGAGCTGTCGA
TTTTGTACTTTTCTTAATCCAAATACAAAGAAAATTTGCGATATGTGCAGCAAATCAAAA
GATTTTTTCCTCGATGCTGACAAAAATGCAACTGCAACGTGTGTCTGA
>g2455.t1 Gene=g2455 Length=675
MTTMYGRDPLEELWKEILDLHWNYLEMEESLKKIDERKKLEGRLREYISIVPHDRKFFLP
ETEHVLRISIQQMRDFSAFKGAIGFESISQYANNLFTKPWRKEYRVIKMYSGFYQHEIRN
NLLDAEKIFIAMGYKLMPNQTLVLEGPICPDQVTNVSRDALTAYVECQIMKQVNSELTSI
GLATTWNEIFNFRECHIGDSSQTIKGLTQMLQSHHIHMHGAMRKDPYALALTSPPMHHHY
QQQQQAQLCSTHCSIHHPHPYNHQNTLPPPPLPATTNVQQQAPNSYYHHYNQPPPPPPPC
SLHYVPQQNCYQHHLPHSKSLDQYDGTKIQQGNGGVNHHRLSLDHNYKQQQQQQQQQQQT
HFDYIDVAFNHPYNQPNSRAPLPYNISSNLGHDAGYYPTTDHTRMFSTNEFYQQQLMQQL
PTTVNDYHHSHHQKSCNYSDASSPAVHDELISFSNEPVRIKPSSEAKLRSSLKKGTQSTT
ASDSVDMEQELNELRALKREKSSTPASTSSDVKTRDGIGNYQAWDYVFQNLEKEEKKNHK
TPTADEKIAVELENLKVTSNGHGPPRDRSLSHKSNNIKPSSSSSSHHTKTRTKSVSAATS
DTQASNHEHKRTSSVMESNQRVQMPKAPELIVGINEWSCRFCTFLNPNTKKICDMCSKSK
DFFLDADKNATATCV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g2455.t1 | Coils | Coil | Coil | 675 | 675 | - |
| 11 | g2455.t1 | Gene3D | G3DSA:1.20.58.2190 | - | 7 | 214 | 8.1E-61 |
| 12 | g2455.t1 | Gene3D | G3DSA:2.20.28.140 | - | 634 | 664 | 4.4E-6 |
| 9 | g2455.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 515 | - |
| 7 | g2455.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 487 | - |
| 6 | g2455.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 515 | - |
| 10 | g2455.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 622 | - |
| 8 | g2455.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 603 | - |
| 1 | g2455.t1 | PANTHER | PTHR15326 | SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC | 7 | 661 | 2.0E-55 |
| 5 | g2455.t1 | ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 637 | 656 | - |
| 4 | g2455.t1 | SMART | SM00547 | zf_4 | 635 | 659 | 0.0078 |
| 3 | g2455.t1 | SUPERFAMILY | SSF143503 | PUG domain-like | 83 | 153 | 3.4E-6 |
| 2 | g2455.t1 | SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 636 | 660 | 5.23E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K17595 (spermatogenesis-associated protein 2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
