General information for g2455.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein tamozhennic.
Parent gene
- The parent gene g2455 is located on chr_3: 18057714..18059264 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2455 | g2455.t4 | TTS | g2455.t4 | 18056258 | 18056258 |
| chr_3 | g2455 | g2455.t4 | isoform | g2455.t4 | 18057221 | 18059264 |
| chr_3 | g2455 | g2455.t4 | exon | g2455.t4.exon1 | 18057221 | 18057348 |
| chr_3 | g2455 | g2455.t4 | cds | g2455.t4.CDS1 | 18057221 | 18057348 |
| chr_3 | g2455 | g2455.t4 | exon | g2455.t4.exon2 | 18057713 | 18058061 |
| chr_3 | g2455 | g2455.t4 | cds | g2455.t4.CDS2 | 18057713 | 18057992 |
| chr_3 | g2455 | g2455.t4 | exon | g2455.t4.exon3 | 18058119 | 18058391 |
| chr_3 | g2455 | g2455.t4 | exon | g2455.t4.exon4 | 18058451 | 18058634 |
| chr_3 | g2455 | g2455.t4 | exon | g2455.t4.exon5 | 18059115 | 18059264 |
| chr_3 | g2455 | g2455.t4 | TSS | g2455.t4 | 18059264 | 18059264 |
Sequences
>g2455.t4 Gene=g2455 Length=1084
AGAGAAGAAAAAAATTTGCTGAAAGAATTATTTATTGGATACAAGTAAAGAAAAAATTTA
GAAAAATTCGTCAAATGCGCTACATAAAAAGTTCTAAAGTAGTGGAGATGTAAAGACAAA
TATAAAAATATTTAAGTGCGCAAAATAAATATAAGATTGCGAAAAAAAGAATCACAGCGT
AAATTGTCAACACAAACACGCTTGTCATTTTATAATTTCTATTTGATAAAGATATACACA
CAGTTGAGAAAAAGAATTAGTTGAAAAAAGTGAGAAAAAATGACGACTATGTATGGACGA
GATCCATTGGAAGAATTATGGAAAGAGATTTTAGATCTTCATTGGAACTACCTCGAGATG
GAAGAGAGCTTAAAGAAAATTGATGAACGAAAAAAGCTGGAAGGACGATTGAGAGAATAT
ATAAGTATTGTGCCACATGATAGGAAATTTTTCTTACCTGAAACAGAACATGTTCTTCGC
ATAAGCATACAACAAATGCGAGATTTTTCAGCTTTCAAAGGCGCCATCGGATTTGAGTCA
ATTAGTCAGTATGCAAATAATCTTTTCACAAAGCCTTGGCGAAAGGAATATAGAGTGATC
AAGGTCAATGTATTCGGGATTTTATCAGCATGAAATTAGAAACAATTTACTCGATGCAGA
GAAAATTTTTATCGCAATGGGCTACAAATTAATGCCAAATCAAACGCTTGTTCTTGAAGG
CCCGATATGTCCAGATCAAGTGACAAATGTAAGTCGTGATGCACTCACTGCTTATGTAGA
GTGTCAAATAATGAAGCAAGTCAATAGTGAACTGACCTCAATTGGCCTCGCAACGACGTG
GAATGAAATTTTTAATTTCCGCGAATGTCACATTGGTGACTCATCTCAGACGATCAAAGG
TCTAACACAGATGCTGCAATCACATCACATACACATGCACGGAGCTATGAGAAAGGATCC
ATATGCTTTGGCTCTTACATCACCGCCTATGCACCATCATTATCAACAGCAACAGCAAGC
GCAACTTTGTAGTACACATTGTAGCATTCACCATCCTCATCCGTACAATCATCAAAATAC
CCTG
>g2455.t4 Gene=g2455 Length=136
MGYKLMPNQTLVLEGPICPDQVTNVSRDALTAYVECQIMKQVNSELTSIGLATTWNEIFN
FRECHIGDSSQTIKGLTQMLQSHHIHMHGAMRKDPYALALTSPPMHHHYQQQQQAQLCST
HCSIHHPHPYNHQNTL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g2455.t4 | Gene3D | G3DSA:1.20.58.2190 | - | 1 | 84 | 0 |
| 1 | g2455.t4 | PANTHER | PTHR15326 | SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC | 1 | 82 | 0 |
| 2 | g2455.t4 | PANTHER | PTHR15326:SF2 | PROTEIN TAMOZHENNIC | 1 | 82 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007275 | multicellular organism development | BP |
| GO:0015031 | protein transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed