General information for g2455.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein tamozhennic.
Parent gene
- The parent gene g2455 is located on chr_3: 18057714..18059264 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2455 | g2455.t5 | isoform | g2455.t5 | 18057714 | 18058505 |
| chr_3 | g2455 | g2455.t5 | exon | g2455.t5.exon1 | 18057714 | 18058259 |
| chr_3 | g2455 | g2455.t5 | cds | g2455.t5.CDS1 | 18057714 | 18058061 |
| chr_3 | g2455 | g2455.t5 | exon | g2455.t5.exon2 | 18058323 | 18058505 |
| chr_3 | g2455 | g2455.t5 | TSS | g2455.t5 | 18059264 | 18059264 |
| chr_3 | g2455 | g2455.t5 | TTS | g2455.t5 | NA | NA |
Sequences
>g2455.t5 Gene=g2455 Length=729
ATGACGACTATGTATGGACGAGATCCATTGGAAGAATTATGGAAAGAGATTTTAGGTAAA
TCATAATCAATTATTATTCAATAAATTAAATTAAAAATGACAAATTCATTTTAGATCTTC
ATTGGAACTACCTCGAGATGGAAGAGAGCTTAAAGAAAATTGATGAACGAAAAAAGCTGG
AAGAACATGTTCTTCGCATAAGCATACAACAAATGCGAGATTTTTCAGCTTTCAAAGGCG
CCATCGGATTTGAGTCAATTAGTCAGTATGCAAATAATCTTTTCACAAAGCCTTGGCGAA
AGGAATATAGAGTGATCAAGGTCAGTAATATTGTGCATTTCCTTAAAGTTCATTAAACTT
ATTTATTTACTTATTTTTTAGATGTATTCGGGATTTTATCAGCATGAAATTAGAAACAAT
TTACTCGATGCAGAGAAAATTTTTATCGCAATGGGCTACAAATTAATGCCAAATCAAACG
CTTGTTCTTGAAGGCCCGATATGTCCAGATCAAGTGACAAATGTAAGTCGTGATGCACTC
ACTGCTTATGTAGAGTGTCAAATAATGAAGCAAGTCAATAGTGAACTGACCTCAATTGGC
CTCGCAACGACGTGGAATGAAATTTTTAATTTCCGCGAATGTCACATTGGTGACTCATCT
CAGACGATCAAAGGTCTAACACAGATGCTGCAATCACATCACATACACATGCACGGAGCT
ATGAGAAAG
>g2455.t5 Gene=g2455 Length=116
MYSGFYQHEIRNNLLDAEKIFIAMGYKLMPNQTLVLEGPICPDQVTNVSRDALTAYVECQ
IMKQVNSELTSIGLATTWNEIFNFRECHIGDSSQTIKGLTQMLQSHHIHMHGAMRK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g2455.t5 | Gene3D | G3DSA:1.20.58.2190 | - | 1 | 107 | 0 |
| 1 | g2455.t5 | PANTHER | PTHR15326 | SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC | 1 | 105 | 0 |
| 2 | g2455.t5 | PANTHER | PTHR15326:SF2 | PROTEIN TAMOZHENNIC | 1 | 105 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007275 | multicellular organism development | BP |
| GO:0015031 | protein transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed